Table 1 Statistics of the multiple sequencing datasets in our study
From: Accuracy benchmark of the GeneMind GenoLab M sequencing platform for WGS and WES analysis
Samples | Library Type | Sequencing Platform | Read (M) | Bases (Gb) | Duplication rate (%) | >Q20 | >Q30 | Alignment rate (%) | Mean coverage (X) | %_bases_above_15x |
|---|---|---|---|---|---|---|---|---|---|---|
GL_WGS_22 | WGS | GenoLab M | 442.77 | 66.42 | 1.73% | 95.35% | 88.26% | 99.88% | 22.39 | 81.30% |
GL_WGS_33 | WGS | GenoLab M | 662.66 | 99.40 | 1.93% | 95.22% | 87.99% | 99.88% | 33.50 | 93.90% |
NA_WGS_22 | WGS | NovaSeq 6000 | 424.9 | 63.73 | 3.57% | 95.92% | 90.05% | 99.64% | 21.37 | 87.30% |
NA_WGS_33 | WGS | NovaSeq 6000 | 655.83 | 98.38 | 5.32% | 95.92% | 90.05% | 99.64% | 32.99 | 97.70% |
GL_WES_100 | WES Agilent V8 | GenoLab M | 41.87 | 6.28 | 6.00% | 93.95% | 84.71% | 99.95% | 112.42 | 98.00% |
GL_WES_raw | WES Agilent V8 | GenoLab M | 70.36 | 10.55 | 9.71% | 93.95% | 84.71% | 99.95% | 188.90 | 99.00% |
NA_WES_100 | WES Agilent V8 | NovaSeq 6000 | 39.35 | 5.90 | 14.85% | 98.01% | 94.05% | 99.95% | 107.72 | 99.30% |
NA_WES_raw | WES Agilent V8 | NovaSeq 6000 | 81.16 | 12.17 | 26.78% | 98.01% | 94.05% | 99.95% | 222.19 | 99.60% |
NT_WES_100 | WES Agilent V8 | NextSeq 550 | 37.54 | 5.56 | 5.67% | 86.62% | 79.06% | 99.83% | 101.13 | 99.30% |
NT_WES_raw | WES Agilent V8 | NextSeq 550 | 131.76 | 19.50 | 17.54% | 86.61% | 79.06% | 99.83% | 354.92 | 99.60% |