Fig. 7

Detection of recombination breakpoints in the alignment of 20 EHV2 genomes. A Schematic representation of EHV2 genome annotation including 78 ORFs, CDS (yellow), repeats regions (the orange forward facing arrows- internal repeats IR smaller arrows within, and terminal repeats TR at the far right). The labels indicate the positions of the ORFs along the genome length. B Recombination breakpoints detected per 200 nucleotide (nt) window. The vertical lines represent recombination breakpoints per 200 nt window in each analysed sequence, as detected with 95% confidence (grey) or 99% confidence in (black). Horizontal lines indicate the limits for global hot spot detection, indicated at 95% confidence (**) or 99% confidence (+ +)