Whole genome sequence analysis of equid gammaherpesvirus -2 field isolates reveals high levels of genomic diversity and recombination

Table 2 Details of archived and contemporary Australian EHV2 isolates used in this study

EHV2 Virus isolate ID	Year	Type ^a/Similarity	Location ^b	Source	References	Virus passage ^c	GenBank accession number	SRR accession number
1–141-67	1967	1–141-67	Parkville	Nasal	Turner et al.,1970	23	MW322569	SRR17631889
2–16-67	1967	86–67	Parkville	Nasal	Turner et al.,1970	21	MW322570	SRR17631888
ER34-67	1967	1–141-67	Bundoora	Nasal	Turner & Studdert, 1970	14	MW322583	SRR17631879
1039–94	1994	1–141-67	Euroa	Nasal	[36]	8	MW322581	SRR17631878
691–82	1982	86–67	Bacchus Marsh	Pharyngeal	Browning & Studdert, 1974	9	MW322580	SRR17631877
Fin60-72	1972	86–67	Laverton	Nasal	Wilks & Studdert, 1974	9	MW322584	SRR17631876
Fin150-72	1972	86–67	Laverton	Nasal	Wilks & Studdert, 1974	9	MW322585	SRR17631875
Fin180-72	1972	86–67	Laverton	Nasal	Wilks & Studdert, 1974	9	MW322586	SRR17631874
9951E-69	1969	1–141-67	Frankston	Eye	Browning et al.,1988b	10	MW322582	SRR17631873
157IFeye-69	1969	86–67	Frankston	Eye	Studdert,1971	11	MW322579	SRR17631872
H1-3–2018	2018	86–67	Wallington	PBMC	Present study	6	MW322571	SRR17631887
H2-25–2018	2018	86–67	Wallington	PBMC	Present study	6	MW322573	SRR17631886
H3-80–2018	2018	1–141-67	Wallington	PBMC	Present study	6	MW322576	SRR17631885
H4-18–2018	2018	86–67	Wallington	PBMC	Present study	6	MW322572	SRR17631884
H5-91–2018	2018	86–67	Wallington	PBMC	Present study	6	MW322577	SRR17631883
H5-57–2018	2018	86–67	Wallington	PBMC	Present study	6	MW322574	SRR17631882
H5-60–2018	2018	86–67	Wallington	PBMC	Present study	6	MW322575	SRR17631881
H4-147–2018	2018	86–67	Wallington	PBMC	Present study	6	MW322578	SRR17631880

^a Type based on gB (site 1) sequence [36]
^b All locations are suburbs or towns in Victoria, Australia
^c Virus passage number (in EFKs) at which the viruses were used in this present study

ISSN: 1471-2164