Fig. 3

Target site analysis of NSP2. Each data point in the plot represents the 5′ position of a degradome read mapped to the reference transcriptome. The orange box indicates the position of the potential recognition site (transcript nucleotide position 570). The enlarged window is an alignment of the miRNAs with homology to this recognition site with the orange arrow representing the cleavage position, blue arrows pointing to miRNAs that were found to be AM responsive in Dacotah, and the red arrow pointing to an AM-responsive miRNA in F1–346L. “|” indicates Watson-Crick base pairing, “¦” indicates G-U wobble, and “*” indicates a mismatch with the Pavir.9KG512500.1. target site