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Table 2 Quality assessment of sequencing data prior to processing

From: Effects of berberine hydrochloride on immune response in the crab Charybdis japonica

Sample

raw_reads

clean_reads

clean_bases

valid_bases

Q30

GC

BH1_1

53,055,766

51,874,260

7,576,975,390

95.21%

94.01%

49.32%

BH1_2

54,761,130

53,474,898

7,791,927,013

94.86%

93.83%

49.24%

BH1_3

54,462,306

53,114,956

7,761,807,684

95.01%

93.78%

48.72%

BH1_4

53,919,386

52,562,248

7,648,127,562

94.56%

93.64%

48.65%

CK1

54,458,976

53,249,998

7,744,315,340

94.80%

93.90%

49.21%

CK2

50,955,922

49,544,232

7,149,461,766

93.54%

93.74%

49.66%

CK3

54,127,462

52,845,974

7,696,579,447

94.80%

93.88%

48.94%

CK4

54,155,066

52,815,070

7,726,421,293

95.11%

93.77%

49.01%