Comparative transcriptomic analysis revealed dynamic changes of distinct classes of genes during development of the Manila clam (Ruditapes philippinarum)

Zhang, Yanming; Nie, Hongtao; Yin, Zhihui; Yan, Xiwu

doi:10.1186/s12864-022-08813-0

Table 1 Summary of RNA-seq analysis based on the R. philippinarum transcriptomes

From: Comparative transcriptomic analysis revealed dynamic changes of distinct classes of genes during development of the Manila clam (Ruditapes philippinarum)

sample	library	raw_reads	clean_reads	clean_bases	error_rate	Q20	Q30	GC_pct
B1	FRAS202210859-1r	43,955,668	41,240,258	6.19G	0.03	97.01	91.4	36.97
B2	FRAS202210860-1r	45,773,354	43,133,392	6.47G	0.03	97.4	92.37	33.32
B3	FRAS202210861-1r	46,226,514	44,554,898	6.68G	0.03	97.05	91.57	33.06
D1	FRAS202210868-1r	45,021,880	43,356,444	6.5G	0.03	97.27	92.04	33.44
D2	FRAS202210869-1r	43,959,224	42,842,964	6.43G	0.03	97.01	91.38	33.87
D3	FRAS202210870-2r	44,267,138	42,584,080	6.39G	0.03	97.75	93.23	34.65
EC1	FRAS202210853-1r	46,129,118	43,964,100	6.59G	0.03	97.15	91.66	31.74
EC2	FRAS202210854-1r	40,342,868	39,191,980	5.88G	0.03	96.85	90.94	31.73
EC3	FRAS202210855-1r	46,780,072	44,927,680	6.74G	0.03	97	91.36	31.71
FE1	FRAS202210841-1r	47,326,730	45,422,278	6.81G	0.03	96.93	91.34	34.32
FE2	FRAS202210842-1r	44,260,130	42,490,688	6.37G	0.03	96.89	91.26	33.5
FE3	FRAS202210843-1r	46,776,748	44,882,736	6.73G	0.03	96.94	91.26	32.49
G1	FRAS202210862-1r	43,584,396	41,886,498	6.28G	0.03	97.22	91.91	32.83
G2	FRAS202210863-1r	43,219,570	41,582,452	6.24G	0.03	97.22	91.98	34.1
G3	FRAS202210864-1r	44,044,804	42,638,312	6.4G	0.03	97.15	91.74	32.73
J1	FRAS202210880-1r	47,022,484	45,390,096	6.81G	0.03	97.18	91.88	35.74
J2	FRAS202210881-1r	45,234,870	43,510,270	6.53G	0.03	97.17	91.78	34.81
J3	FRAS202210882-1r	45,850,112	43,860,432	6.58G	0.03	97.3	92.1	34.35
P1	FRAS202210874-1r	47,613,292	46,100,988	6.92G	0.03	97.05	91.36	33.7
P2	FRAS202210875-1r	45,571,546	44,192,698	6.63G	0.03	96.85	91.01	33.08
P3	FRAS202210876-1r	45,057,494	43,713,638	6.56G	0.03	97.11	91.57	33.66
PB1_1	FRAS202210844-1r	45,417,676	43,792,044	6.57G	0.03	96.72	90.82	32.83
PB1_2	FRAS202210845-1r	45,163,062	42,668,094	6.4G	0.03	96.96	91.29	32.97
PB1_3	FRAS202210846-1r	45,343,044	43,198,356	6.48G	0.03	97.11	91.69	33.14
PB2_1	FRAS202210847-1r	43,273,166	41,336,196	6.2G	0.03	97.17	91.78	32.22
PB2_2	FRAS202210848-1r	42,948,898	41,104,980	6.17G	0.03	96.97	91.34	32.26
PB2_3	FRAS202210849-1r	41,586,510	39,737,474	5.96G	0.03	97.11	91.61	32.15
S1	FRAS202210877-1r	44,572,994	43,317,056	6.5G	0.03	97.01	91.45	35.81
S2	FRAS202210878-1r	44,611,258	43,410,122	6.51G	0.03	97.18	91.86	35.14
S3	FRAS202210879-1r	44,270,558	43,022,476	6.45G	0.03	97.3	92.13	35.4
T1	FRAS202210865-1r	46,155,010	44,704,922	6.71G	0.03	97.03	91.45	32.19
T2	FRAS202210866-1r	46,228,808	44,959,292	6.74G	0.03	96.88	91.06	32.58
T3	FRAS202210867-1r	40,641,392	39,456,304	5.92G	0.03	96.94	91.2	32.31
TC1	FRAS202210850-1r	41,836,038	40,196,782	6.03G	0.03	96.98	91.22	31.96
TC2	FRAS202210851-1r	42,698,236	40,866,586	6.13G	0.03	97.18	91.78	32.1
TC3	FRAS202210852-1r	41,254,704	39,525,346	5.93G	0.03	97.45	92.23	31.83
U1	FRAS202210871-1r	47,866,654	46,187,404	6.93G	0.02	98.26	94.39	32.23
U2	FRAS202210872-1r	44,217,642	42,542,540	6.38G	0.03	96.86	91.08	33.81
U3	FRAS202210873-1r	42,624,270	41,253,684	6.19G	0.03	96.75	90.76	33.21

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