Table 4 Three species motifs found by CircCNN match three known motif databases by TOMTOM
From: Prediction of Back-splicing sites for CircRNA formation based on convolutional neural networks
| Â | FilterID | Motif found by CircCNN | Known motif in database | Known motif sequence | Gene Annotation | E-value | |
|---|---|---|---|---|---|---|---|
Human | Input1 | filter9 | GAGAAAGUUA | RNCMPT00090 | AGAGAAA | SRSF10 | 0.0638 |
filter16 | AUUUAUUUUA | RNCMPT00032 | UUAUUUU | HuR | 0.0115 | ||
filter36 | UCUCUUUUUG | RNCMPT00012 | CUUUUUU | CPEB2 | 0.0205 | ||
Input2 | filter2 | CUUGGUUUCC | RNCMPT00086 | UUUGUUU | ZC3H14 | 0.0766 | |
filter15 | AGUACCUUAC | RNCMPT00186 | CCUUUCC | PCBP1 | 0.0418 | ||
filter18 | CCAUUUUCUU | RNCMPT00269 | ACUUUCU | PTBP1 | 0.0133 | ||
Mouse | Input1 | filter0 | AACAUUUUCC | RNCMPT00239 | CCUUUCCC | PCBP1 | 0.0072 |
filter41 | ACAAUUCCCG | RNCMPT00239 | CCUUUCCC | PCBP1 | 0.0498 | ||
| Â | ACAAUUCCCG | RNCMPT00215 | CUUUCCCU | PCBP3 | 0.0956 | ||
Input2 | filter1 | AAAAAAAAAA | RNCMPT00062 | UAAAAGG | KHDRBS1 | 0.0189 | |
filter125 | UUCCCUGUGA | RNCMPT00215 | CUUUCCCU | PCBP3 | 0.0452 | ||
filter160 | UGUAUGAGGA | RNCMPT00051 | GUGUGUG | RBM38 | 0.0673 | ||
| Â | UGUAUGAGGA | RNCMPT00062 | UAAAAGG | KHDRBS1 | 0.0972 | ||
Fly | Input1 | filter15 | AUGUCCAUUC | RNCMPT00123 | GUGCAUGC | A2BP1 | 0.0499 |
filter22 | UUUAACUAAA | RNCMPT00147 | AACUAAG | CG2931 | 0.023 | ||
filter32 | GUUGGGUUUA | RNCMPT00120 | UUUAGUU | FNE | 0.0536 | ||
Input2 | filter10 | GCACUGCACU | RNCMPT00145 | AUUGCACA | SNF | 0.0465 | |
filter19 | UUACCACACG | RNCMPT00124 | CCGCGCGG | LARK | 0.0375 | ||
filter46 | UAAUAAACUU | RNCMPT00142 | AUAAUAA | QKR58E-1 | 0.0377 | ||