Table 4 General features of C. pecorum plasmids used for phylogenetic analysis
Plasmid ID (pCpec) | Country of origin | Source | Disease pathotype | Length (bp) | % GC | Accession number |
|---|---|---|---|---|---|---|
PV7855 | Italy | Alpine chamois; lung | Pneumonia | 7674 | 31.7 | OV648022 |
PV6959 | Italy | Water buffalo; brain | Meningoencephalomyelitis | 7676 | 31.7 | OV648021 |
L1 | Austria | Pig; lung | Pneumonia | 7548 | 31.7 | KT223773 |
W73 | Ireland | Sheep; faeces | Asymptomatic/enteric | 7547 | 31.6 | KT223780 |
66P130 | USA | Cattle; faeces | No clinical disease | 7548 | 31.7 | KT223766 |
1886 | Austria | Pig; lung | Pneumonia | 7548 | 31.7 | KT223767 |
Cur/E11/Rec | Australia | Sheep; rectum | No clinical disease | 7547 | 31.6 | KT223768 |
Cur/E19/Rec | Australia | Sheep; rectum | No clinical disease | 7547 | 31.6 | KT223769 |
DBDeUG | Australia | Koala; UGT | UGT infection | 7547 | 31.5 | KT223770 |
IPA | USA | Sheep; joint | Polyarthritis | 7547 | 31.6 | KT223771 |
IPTaLE | Australia | Koala; ocular | Conjunctivitis | 7547 | 31.5 | KT223772 |
LW623 | USA | Cattle; brain | Encephalomyelitis | 7547 | 31.6 | KT223774 |
MC/MarsBar | Australia | Koala; UGT | Cystitis | 7547 | 31.5 | KT223775 |
R106 | Austria | Pig; lung | Pneumonia | 7548 | 31.7 | KT223776 |
SA/K09/Ure | Australia | Koala; urethra | No clinical disease | 7547 | 31.6 | KT223777 |
SA/K84/Ure | Australia | Koala; urethra | No clinical disease | 7547 | 31.6 | KT223778 |
Vic/R6/UGT | Australia | Koala; UGT | No clinical disease | 7547 | 31.6 | KT223779 |
WA/B31/Ileal | Australia | Cattle; ileum | Encephalomyelitis | 7548 | 31.7 | KT223781 |
HazBoEye | Australia | Koala; ocular | Conjunctivitis | 7547 | 31.8 | KT352920 |
HazBoUGT | Australia | Koala; UGT | Conjunctivitis | 7547 | 31.8 | KT352921 |
NoHerEye | Australia | Koala; ocular | Conjunctivitis | 7547 | 31.5 | KT352922 |
TedHUre | Australia | Koala; urethra | Cystitis | 7547 | 31.5 | KT352923 |
PMHaUre | Australia | Koala; urethra | Cystitis | 7547 | 31.5 | KT352924 |