Table 1 Triggers of PHAS loci in strawberry

PHAS21-4

CSC1-like protein

maker-Fvb1-2-snap-gene-74.69

miR11301a/b/c; miR11285a/b

21;22

PHAS21-8

CSC1-like protein

maker-Fvb1-3-snap-gene-60.54

miR11301a/b/c; miR11285a/b

21;22

PHAS21-9

PPR

Intergenic

miR11285a/b

22

PHAS21-10

ncRNA

Intergenic

miR482a/b/y

22/22/21

PHAS21-13

NULL

maker-Fvb2-1-augustus-gene-234.53 (E3 ubiquitin-protein ligase RNF126-like)

miR482n/s/x; miR2118b

22

PHAS21-17

ncRNA

maker-Fvb3-1-augustus-gene-207.32

miRN14

21

PHAS21-18

ncRNA

maker-Fvb3-1-augustus-gene-207.33

miRN14

21

PHAS21-23

PPR

augustus_masked-Fvb3-2-processed-gene-267.11 (PPR); augustus_masked-Fvb3-2-processed-gene-267.12 (PPR)

miR11301a/b/c; miR11285a/b; miR171d/e/f

21; 22

PHAS21-25

uncharacterized mRNA

Intergenic

miR482a/b

22

PHAS21-26

ncRNA

Intergenic

miRN14

21

PHAS21-27

ncRNA

Intergenic

miRN14

21

PHAS21-28

PPR

snap_masked-Fvb3-4-processed-gene-39.28 (PPR);

maker-Fvb3-4-snap-gene-39.55 (PPR)

miR11301a/b/c

21

PHAS21-29

ASA1

augustus_masked-Fvb3-4-processed-gene-44.0 (ASA1)

miR156n

20

PHAS21-30

ncRNA

maker-Fvb3-4-augustus-gene-194.36

miRN14

21

PHAS21-33

HLCS

maker-Fvb4-1-snap-gene-75.30

miR390a/b/c/d/e/f/g/h/i

21

PHAS21-34

NULL

Intergenic

miRN11a/b/c

22

PHAS21-36

ncRNA

Intergenic

miR11301a/b/c; miR164c

21; 20

PHAS21-39

NULL

Intergenic

miR11286a; miRN11a/b/c

21; 22

PHAS21-41

TAS3-like

maker-Fvb4-3-augustus-gene-122.25

miR390a/b/c/d/e/f/g/h/i

21

PHAS21-42

NULL

snap_masked-Fvb4-3-processed-gene-219.12

miR390a/b/c/d/e/f/g/h/i

21

PHAS21-43

NULL

Intergenic

miR390a/b/c/d/e/f/g/h/i

21

PHAS21-44

NULL

Intergenic

miR11285a/b

22

PHAS21-47

TAS3-like

maker-Fvb4-4-augustus-gene-90.46

miR390a/b/c/d/e/f/g/h/i

21

PHAS21-48

NULL

maker-Fvb4-4-snap-gene-187.25 (E3 ubiquitin-protein ligase XBAT32)

miR390a/b/c/d/e/f/g/h/i

21

PHAS21-50

MIR159c

Intergenic

miR319a/b/c/d/e/f/g/h; miR159a/b/c/d/e/f/g/h/i/j/k/l

20; 21

PHAS21-54

MIR159c

Intergenic

miR319a/b/c/d/e/f/g/h; miR159a/b/c/d/e/f/g/h/i/j/k/l

20; 21

PHAS21-56

MIR159c

Intergenic

miR319a/b/c/d/e/f/g/h; miR159a/b/c/d/e/f/g/h/i/j/k/l

20; 21

PHAS21-57

NULL

maker-Fvb6-1-augustus-gene-4.51

miR482p/t

21

PHAS21-60

ncRNA

augustus_masked-Fvb6-1-processed-gene-36.17 (CM3)

miR482p/t

21

PHAS21-62

NULL

Intergenic

miR390a/b/c/d/e/f/g/h/i; miR482c/f/h/u/v/w

21

PHAS21-63

NULL

Intergenic

miR395a/b/c/d/e/f/g/h/i/j/k/l/m/n/o/p; miRN3

21

PHAS21-65

ncRNA

snap_masked-Fvb6-1-processed-gene-319.21

miR482n/s/x; miR2118b

22

PHAS21-66

ncRNA

Intergenic

miRN11a/b/c; miR482d/e/g

22; 21

PHAS21-67

NULL

Intergenic

miR395a/b/c/d/e/f/g/h/i/j/k/l/m/n/o/p; miRN3

21

PHAS21-68

NULL

maker-Fvb6-2-snap-gene-237.55

miR482c/d/e/f/g/h/u/v/w/x; miR2118b

21; 22

PHAS21-69

NULL

augustus_masked-Fvb6-2-processed-gene-304.5 (CM3)

miR482p/t

21

PHAS21-73

NULL

maker-Fvb6-3-augustus-gene-30.84

miR482p/t

21

PHAS21-74

NULL

Intergenic

miR482c/f/h/u/v/w; miR390a/b/c/d/e/f/g/h/i

21

PHAS21-76

uncharacterized mRNA

maker-Fvb6-3-snap-gene-381.45

miR11287a/b; miR482n/s/x; miR2118b; miRN14; miR7125a/b

21; 22

PHAS21-81

40S ribosomal protein S29

snap_masked-Fvb7-4-processed-gene-5.26

miRN11a/b/c

22

PHAS24-2

ncRNA

Intergenic

miRN29

21

PHAS24-11

CSC1-like protein

Intergenic

miR11285a/b

22

PHAS24-14

NULL

Intergenic

miR482d/e/g

21

PHAS24-19

uncharacterized mRNA

Intergenic

miR172a

20

PHAS24-26

uncharacterized mRNA

Intergenic

miR172a

20

PHAS24-29

ncRNA

Intergenic

miRN14

21

PHAS24-30

ncRNA

Intergenic

miRN14

21

PHAS24-42

uncharacterized mRNA

Intergenic

miR11288b/e/i/l/n; miR395a/b/c/d/e/f/g/h/i/j/k/l/m/n/o/p

21

PHAS24-44

uncharacterized mRNA

Intergenic

miR6275a/b/c/d

21

PHAS24-47

ncRNA

maker-Fvb4-3-snap-gene-7.49 (RNA helicase)

miR156r/w; miRN16

20; 22

PHAS24-71

uncharacterized mRNA

Intergenic

miR172a

20

PHAS24-74

ncRNA

Intergenic

miRN29

21