Table 5 RNA editing sites in the S. albonervius chloroplast genome
Gene Name | Nt pos | AA pos | Align Col | Effect | Score |
|---|---|---|---|---|---|
accD | 451 | 151 | 162 | CAC (H) =  > UAC (Y) | 1 |
accD | 824 | 275 | 304 | UCG (S) =  > UUG (L) | 0.8 |
accD | 1225 | 409 | 450 | CCA (P) =  > UCA (S) | 1 |
accD | 1433 | 478 | 519 | CCU (P) =  > CUU (L) | 1 |
atpA | 773 | 258 | 258 | UCA (S) =  > UUA (L) | 1 |
atpA | 791 | 264 | 264 | CCC (P) =  > CUC (L) | 1 |
atpI | 629 | 210 | 213 | UCA (S) =  > UUA (L) | 1 |
ccsA | 110 | 37 | 39 | CCA (P) =  > CUA (L) | 0.86 |
ccsA | 370 | 124 | 127 | CCC (P) =  > UCC (S) | 0.86 |
matK | 284 | 95 | 108 | UCU (S) =  > UUU (F) | 0.86 |
matK | 637 | 213 | 229 | CAU (H) =  > UAU (Y) | 1 |
matK | 1240 | 414 | 430 | CAU (H) =  > UAU (Y) | 1 |
ndhA | 566 | 189 | 189 | UCA (S) =  > UUA (L) | 1 |
ndhA | 1073 | 358 | 358 | UCC (S) =  > UUC (F) | 1 |
ndhB | 149 | 50 | 50 | UCA (S) =  > UUA (L) | 1 |
ndhB | 467 | 156 | 156 | CCA (P) =  > CUA (L) | 1 |
ndhB | 586 | 196 | 196 | CAU (H) =  > UAU (Y) | 1 |
ndhB | 611 | 204 | 204 | UCA (S) =  > UUA (L) | 0.8 |
ndhB | 737 | 246 | 246 | CCA (P) =  > CUA (L) | 1 |
ndhB | 746 | 249 | 249 | UCU (S) =  > UUU (F) | 1 |
ndhB | 830 | 277 | 277 | UCA (S) =  > UUA (L) | 1 |
ndhB | 836 | 279 | 279 | UCA (S) =  > UUA (L) | 1 |
ndhB | 1481 | 494 | 494 | CCA (P) =  > CUA (L) | 1 |
ndhD | 359 | 120 | 128 | UCA (S) =  > UUA (L) | 1 |
ndhD | 575 | 192 | 200 | UCA (S) =  > UUA (L) | 1 |
ndhD | 854 | 285 | 293 | UCA (S) =  > UUA (L) | 1 |
ndhD | 863 | 288 | 296 | CCC (P) =  > CUC (L) | 1 |
ndhD | 1286 | 429 | 437 | UCA (S) =  > UUA (L) | 0.8 |
ndhF | 290 | 97 | 97 | UCA (S) =  > UUA (L) | 1 |
ndhF | 1340 | 447 | 447 | UCU (S) =  > UUU (F) | 1 |
ndhG | 166 | 56 | 56 | CAU (H) =  > UAU (Y) | 0.8 |
ndhG | 314 | 105 | 105 | ACA (U) =  > AUA (I) | 0.8 |
petB | 418 | 140 | 140 | CGG (R) =  > UGG (W) | 1 |
petB | 611 | 204 | 204 | CCA (P) =  > CUA (L) | 1 |
psbF | 77 | 26 | 26 | UCU (S) =  > UUU (F) | 1 |
rpl20 | 308 | 103 | 103 | UCA (S) =  > UUA (L) | 0.86 |
rpoA | 824 | 275 | 279 | UCA (S) =  > UUA (L) | 1 |
rpoB | 983 | 328 | 345 | GCG (A) =  > GUG (V) | 1 |
rpoC1 | 511 | 171 | 171 | CCC (P) =  > UCC (S) | 1 |
rpoC1 | 1592 | 531 | 548 | GCA (A) =  > GUA (V) | 0.86 |
rpoC1 | 2039 | 680 | 710 | CCC (P) =  > CUC (L) | 1 |
rpoC2 | 2701 | 901 | 1101 | CAU (H) =  > UAU (Y) | 1 |
rpoC2 | 3695 | 1232 | 1452 | UCG (S) =  > UUG (L) | 0.86 |
rps2 | 248 | 83 | 83 | UCA (S) =  > UUA (L) | 1 |
rps14 | 80 | 27 | 27 | UCA (S) =  > UUA (L) | 1 |
rps14 | 149 | 50 | 53 | CCA (P) =  > CUA (L) | 1 |