Table 3 The mean and standard deviation (SD) of runtime in minutes for 30 repeated runs by each method at different number of longitudinal samples (n) and filtered OTUs (\(\tilde{P}\)) in TEDDY data. The OTUs in each dataset are filtered by either relative abundance \(>10^{-6}\), prevalence \(>5\%\) or relative abundance \(>10^{-5}\), prevalence \(>10\%\)
Mean Runtime (SD) | |||||
|---|---|---|---|---|---|
Dataset scale | JMR-NC | ZIBR-N | LMM-N | JMR | |
\(n=153\) | \(\tilde{P}=359\) | 11.62 (0.95) | 44.11 (4.72) | 3.01 (0.36) | 35.95 (3.6) |
\(n=153\) | \(\tilde{P}=234\) | 8.02 (0.26) | 20.79 (0.31) | 1.93 (0.04) | 24.58 (0.52) |
\(n=307\) | \(\tilde{P}=370\) | 14.16 (0.65) | 56.01 (4.78) | 5 (0.45) | 43.67 (3.09) |
\(n=307\) | \(\tilde{P}=247\) | 9.69 (0.63) | 37.89 (2.31) | 3.9 (0.24) | 26.97 (0.68) |