Table 2 Distribution of SSRs in the B. chinense mt genome
From: Assembly and comparative analysis of the complete mitochondrial genome of Bupleurum chinense DC
SSR type | Repeats | Number of SSRs | Total |
|---|---|---|---|
monomer | A/T | 175 | 191 |
C/G | 16 | Â | |
dimer | AC/GT | 11 | 147 |
AG/CT | 87 | Â | |
AT/AT | 42 | Â | |
CG/CG | 7 | Â | |
trimer | AAC/GTT | 3 | 16 |
AAG/CTT | 7 | Â | |
AAT/ATT | 3 | Â | |
ACT/AGT | 2 | Â | |
AGG/CCT | 1 | Â | |
tetramer | AAAC/GTTT | 1 | 35 |
AAAG/CTTT | 16 | Â | |
AAAT/ATTT | 1 | Â | |
AACC/GGTT | 2 | Â | |
AAGC/CTTG | 4 | Â | |
AAGT/ACTT | 1 | Â | |
AATC/ATTG | 1 | Â | |
AATG/ATTC | 3 | Â | |
ACTC/AGTG | 1 | Â | |
AGCC/CTGG | 1 | Â | |
AGCT/AGCT | 2 | Â | |
ATCC/ATGG | 1 | Â | |
CCCG/CGGG | 1 | Â | |
pentamer | AAAAG/CTTTT | 1 | 7 |
AAAAT/ATTTT | 1 | Â | |
AAAGT/ACTTT | 1 | Â | |
AAGCC/CTTGG | 1 | Â | |
ACCCG/CGGGT | 1 | Â | |
ACTAG/AGTCT | 1 | Â | |
CCCGG/CCGGG | 1 | Â | |
hexamer | AAAGAT/ATCTTT | 2 | 4 |
AAATAG/ATTTCT | 1 | Â | |
AGCCCT/AGGGCT | 1 | Â |