Table 4 Prediction of RNA editing sites
From: Assembly and comparative analysis of the complete mitochondrial genome of Bupleurum chinense DC
Type | RNA-editing | Number | Percentage |
|---|---|---|---|
hydrophobic | CCA (P) = > CTA (L) | 43 | 30.56% |
CCC (P) = > CTC (L) | 7 |  | |
CCC (P) = > TTC (F) | 6 |  | |
CCG (P) = > CTG (L) | 39 |  | |
CCT (P) = > CTT (L) | 22 |  | |
CTC (L) = > TTC (F) | 6 |  | |
CTT (L) = > TTT (F) | 12 |  | |
GCC (A) = > GTC (V) | 1 |  | |
GCG (A) = > GTG (V) | 6 |  | |
GCT (A) = > GTT (V) | 2 |  | |
CCT (P) = > TTT (F) | 14 |  | |
hydrophilic | CAC (H) = > TAC (Y) | 6 | 12.19% |
CAT (H) = > TAT (Y) | 13 |  | |
CGC (R) = > TGC (C) | 13 |  | |
CGT (R) = > TGT (C) | 31 |  | |
hydrophobic-hydrophilic | CCA (P) = > TCA (S) | 10 | 8.12% |
CCC (P) = > TCC (S) | 13 |  | |
CCT (P) = > TCT (S) | 16 |  | |
CCG (P) = > TCG (S) | 3 |  | |
hydrophilic-hydrophobic | ACA (T) = > ATA (I) | 3 | 48.16% |
ACC (T) = > ATC (I) | 2 |  | |
ACG (T) = > ATG (M) | 9 |  | |
ACT (T) = > ATT (I) | 4 |  | |
CGG (R) = > TGG (W) | 32 |  | |
TCA (S) = > TTA (L) | 77 |  | |
TCC (S) = > TTC (F) | 32 |  | |
TCG (S) = > TTG (L) | 39 |  | |
TCT (S) = > TTT (F) | 51 |  | |
hydrophilic-stop | CAA (Q) = > TAA (X) | 3 | 0.97% |
CAG (Q) = > TAG (X) | 1 |  | |
CGA (R) = > TGA (X) | 1 |  |