Table 6 Comparison of a homologous fragment in the B. chinense cp genome to that in the mt genome
From: Assembly and comparative analysis of the complete mitochondrial genome of Bupleurum chinense DC
| Â | identity/% | Length(bp) | Mismatches | gap opens | mt start | mt end | cp start | cp end | mt gene | cp gene |
|---|---|---|---|---|---|---|---|---|---|---|
1 | 100 | 2199 | 0 | 0 | 228,120 | 225,922 | 99,756 | 101,954 | trnV-GAC | rrn16/trnV-GAC/ycf15 |
2 | 100 | 2199 | 0 | 0 | 225,922 | 228,120 | 139,185 | 141,383 | trnV-GAC | rrn16/trnV-GAC/ycf15 |
3 | 86.822 | 903 | 96 | 13 | 84,048 | 84,936 | 82,223 | 83,116 | – | rpl14/rpl16 |
4 | 77.92 | 1481 | 235 | 44 | 159,455 | 160,882 | 49,996 | 51,437 | – | ndhC/ndhJ/ndhK |
5 | 81.343 | 670 | 65 | 36 | 163,167 | 162,523 | 67,474 | 68,108 | trnW-CCA | petG/trnP-UGG/trnW-CCA |
6 | 100 | 240 | 0 | 0 | 279,182 | 278,943 | 102,429 | 102,668 | – | rrn16 |
7 | 100 | 240 | 0 | 0 | 278,943 | 279,182 | 138,471 | 138,710 | – | rrn16 |
8 | 94.366 | 213 | 12 | 0 | 42,348 | 42,560 | 26,183 | 26,395 | – | rpoB |
9 | 94.366 | 213 | 12 | 0 | 250,603 | 250,815 | 26,183 | 26,395 | – | rpoB |
10 | 74.099 | 888 | 177 | 38 | 64,661 | 63,803 | 138,729 | 139,592 | rrn18 | rrn16 |
11 | 74.099 | 888 | 177 | 38 | 63,803 | 64,661 | 101,547 | 102,410 | rrn18 | rrn16 |
12 | 95.614 | 114 | 5 | 0 | 311,442 | 311,329 | 131,516 | 131,629 | trnN-GUU | trnN-GUU |
13 | 95.614 | 114 | 5 | 0 | 311,329 | 311,442 | 109,510 | 109,623 | trnN-GUU | trnN-GUU |
14 | 85.632 | 174 | 22 | 3 | 130,537 | 130,364 | 31,634 | 31,804 | trnD-GUC | trnD-GUC |
15 | 100 | 78 | 0 | 0 | 325,406 | 325,329 | 100 | 177 | trnH-GUG | trnH-GUG |
16 | 92.308 | 78 | 6 | 0 | 183,473 | 183,396 | 53,659 | 53,736 | trnM-CAU | trnM-CAU |
17 | 92.308 | 78 | 6 | 0 | 211,255 | 211,332 | 53,659 | 53,736 | trnM-CAU | trnM-CAU |
18 | 88.312 | 77 | 7 | 2 | 131,510 | 131,434 | 87,592 | 87,666 | ccmC/trnI-UAU | trnI-CAU |
19 | 88.312 | 77 | 7 | 2 | 131,434 | 131,510 | 153,473 | 153,547 | ccmC/trnI-UAU | trnI-CAU |
20 | 97.368 | 38 | 1 | 0 | 181,820 | 181,783 | 102,705 | 102,742 | – | rrn16 |
21 | 97.368 | 38 | 1 | 0 | 181,783 | 181,820 | 138,397 | 138,434 | – | rrn16 |
22 | 97.368 | 38 | 1 | 0 | 212,945 | 212,908 | 138,397 | 138,434 | – | rrn16 |
23 | 97.368 | 38 | 1 | 0 | 212,908 | 212,945 | 102,705 | 102,742 | – | rrn16 |
24 | 100 | 34 | 0 | 0 | 311,355 | 311,322 | 109,513 | 109,546 | – | trnN-GUU |
25 | 100 | 34 | 0 | 0 | 311,322 | 311,355 | 131,593 | 131,626 | – | trnN-GUU |