Table 1 Statistics of the assembled reference transcriptomes of Plakortis angulospiculatus and Haliclona vansoesti. In brackets are given the percentages of the number of transcripts that received a certain annotation
Species | P. angulospiculatus | H. vansoesti |
|---|---|---|
Number of transcripts | 577,453 | 390,371 |
Number of Trinity ‘genes’ | 344,473 | 157,695 |
Total bp in assembly | 744,143,727 | 335,442,941 |
Max contig length | 136,032 | 60,113 |
Mean contig length (bp) | 1289 | 859 |
Median contig length (bp) | 482 | 409 |
% GC | 49 | 39 |
N20 contig length | 8276 | 4602 |
N50 contig length | 3304 | 1651 |
Number of contigs in N50 | 55,934 | 47,248 |
Number of transcripts over 1000 bp | 165,469 | 79,227 |
Alignment rate to reference transcriptome | 88.98% | 88.95% |
Transcripts w/blast hit (NR-Eukaryota) | 86,305 (15%) | 94,220 (24%) |
Transcripts w/blast hit (NR-Prokaryota) | 142,360 (25%) | 13,682 (4%) |
Transcripts w/blast hit (SP-Metazoa) | 170,324 (29%) | 109,050 (28%) |
Transcripts w/blast hit (SP-Prokaryota) | 215,940 (37%) | 46,627 (12%) |
Transcripts w/GO term (SP-Metazoa) | 124,471 (22%) | 108,524 (28%) |
Transcripts w/GO term (SP-Prokaryota) | 210,685 (36%) | 43,770 (11%) |
Proteins w/KEGG term | 39,657 | 25,883 |