Fig. 3

Prophage clusters show unique gene content, GC content, and length profiles. From top-down: Prophage Mash distance neighbour-joining tree (see Fig. S5), coloured and labelled with phage families. Letters and coloured bars refer to prophage clusters from Fig. 2. Blue and grey panel shows the presence (blue) and absence (grey) of genes within the prophage pangenome, shown as rows in order of gene prevalence. Bottom panels show prophage length (blue) and GC content (orange)