Fig. 6

Prophages encode many putative auxiliary genes involved in different bacterial processes. Top bar chart: stacked bar chart showing prophage gene content as a proportion of total prophage genes, coloured by putative function. Numbers above bars represent total number of genes in each phage species. Heatmaps: putative auxiliary genes identified through comparisons of prophage CDS with bacterial metabolism and virulence databases coloured by absolute abundance. Different colours reflect different databases used (labelled on the right). Putative gene functions are labelled on the left. Bottom bar chart: stacked bar chart showing the phylotype distribution of isolates containing each prophage