Table 2 Significantly down-regulated genes (FDR < 0.01) in the tropical maize line CML228 enriched in chromatin, chromosome, and chromatin remodeling gene ontology categories: log2 fold change and gene expression levels (shown as Z-scores) among the male meiocytes of temperate maize lines B73 and Mo17 and CML228
Gene name | Gene ID | Log2(FC) | CML228 | Mo17 | B73 | ||||
|---|---|---|---|---|---|---|---|---|---|
| Â | Â | Â | SRR5930250 | SRR14498235 | SRR14498234 | SRR5931453 | SRR5931450 | SRR650380 | SRR650383 |
Cl4586_1A, KID-containing protein | Zm00001eb035860 | 1.27 | -0.92 | -0.62 | -1.08 | 1.69 | 0.32 | 0.78 | -0.17 |
Retinoblastoma family 3 | Zm00001eb037120 | 1.14 | -0.48 | -0.24 | -0.68 | 1.40 | 1.47 | -0.85 | -0.63 |
High mobility group (HMG) family A 102 | Zm00001eb041850 | 1.84 | -1.17 | -0.55 | -0.76 | 1.26 | 1.10 | 0.75 | -0.63 |
NA | Zm00001eb060330 | 1.61 | -0.80 | -0.50 | -0.59 | 1.46 | 1.45 | -0.57 | -0.45 |
Pco124429 | Zm00001eb065860 | 1.28 | -1.38 | -0.43 | -0.63 | 1.19 | 1.42 | 0.10 | -0.26 |
Histone 1(H1) 101 | Zm00001eb073400 | 1.17 | -1.40 | -0.59 | -0.73 | 1.58 | 0.74 | 0.33 | 0.06 |
NA | Zm00001eb103320 | 1.49 | -1.09 | -0.82 | -1.05 | 0.88 | 1.37 | 0.12 | 0.59 |
Cl44900_1(183), Sld5 | Zm00001eb108600 | 1.84 | -0.74 | -1.12 | -1.01 | 0.84 | 0.90 | -0.14 | 1.27 |
NA | Zm00001eb114240 | 2.46 | -0.88 | -0.79 | -0.98 | 1.18 | 1.49 | -0.06 | 0.03 |
IDP583 | Zm00001eb146760 | 4.03 | -0.77 | -0.73 | -0.71 | 1.34 | 1.54 | -0.35 | -0.32 |
NA | Zm00001eb160010 | 1.03 | -1.17 | -0.57 | -1.13 | 1.02 | 1.28 | 0.59 | -0.02 |
NA | Zm00001eb184560 | 1.12 | -0.86 | -0.39 | -0.56 | 1.53 | 1.34 | -0.32 | -0.74 |
NA | Zm00001eb215110 | 2.03 | -0.98 | -0.52 | -0.84 | 0.98 | 1.69 | 0.17 | -0.50 |
NA | Zm00001eb229690 | 1.26 | -0.76 | -1.05 | -0.78 | 1.03 | 1.49 | -0.43 | 0.51 |
Si606066c12 | Zm00001eb266890 | 3.21 | -0.69 | -0.57 | -0.57 | 1.36 | 1.56 | -0.57 | -0.53 |
Profilin homolog4 | Zm00001eb270920 | 1.59 | -0.85 | -0.30 | -0.12 | 1.50 | 1.32 | -0.82 | -0.73 |
HMG-transcription factor 12 | Zm00001eb282920 | 1.34 | -1.09 | -1.02 | -0.59 | 0.29 | 0.25 | 0.38 | 1.77 |
NA | Zm00001eb302390 | 6.82 | -0.90 | -0.90 | -0.90 | 0.55 | 0.01 | 0.35 | 1.78 |
Cl57132_1 | Zm00001eb379890 | 1.57 | -1.01 | -0.63 | -1.10 | 1.01 | 1.37 | -0.29 | 0.65 |
Precocious dissociation of sisters-like 5 (Pds5) | Zm00001eb380840 | 1.53 | -0.92 | -0.49 | -0.94 | 1.50 | 1.29 | -0.34 | -0.10 |
NA | Zm00001eb421110 | 1.03 | -0.54 | -0.67 | -0.55 | 0.57 | 2.06 | -0.48 | -0.39 |
Histone 2B3 | Zm00001eb099910 | 1.67 | -0.97 | -0.93 | -1.07 | 0.55 | 0.14 | 0.88 | 1.40 |
NA | Zm00001eb110350 | 1.00 | -1.12 | -0.34 | -1.01 | 1.50 | 1.11 | 0.18 | -0.31 |
Chromatin complex subunit A 101 | Zm00001eb117870 | 1.88 | -0.73 | -0.61 | -0.53 | 1.70 | 1.16 | -0.69 | -0.30 |
Histone 2B2 | Zm00001eb177270 | 1.03 | -1.04 | -0.85 | -1.25 | 1.14 | 0.59 | 0.66 | 0.75 |
HMG-Y-related protein A (Umc1511) | Zm00001eb179440 | 1.68 | -1.04 | -0.63 | -0.88 | 1.02 | 1.48 | 0.52 | -0.47 |
NA | Zm00001eb195120 | 1.28 | -0.99 | -1.12 | -0.93 | 0.81 | 0.66 | 0.27 | 1.31 |
Global transcription factor C (Spt16; Gtc102) | Zm00001eb229990 | 1.21 | -0.41 | -0.54 | -1.07 | 1.76 | 1.01 | -0.35 | -0.39 |
NA | Zm00001eb231050 | 1.10 | -0.97 | -0.71 | -0.64 | 0.60 | 1.92 | 0.10 | -0.31 |
Nucleosome/chromatin assembly factor A104 | Zm00001eb244920 | 1.01 | 0.01 | -0.84 | -1.00 | 0.95 | 1.73 | -0.52 | -0.32 |
Global transcription factor A (Spt6; Gtb101) | Zm00001eb291590 | 1.35 | -0.91 | -0.46 | -1.07 | 1.38 | 1.35 | -0.32 | 0.03 |
Histone 1a | Zm00001eb301680 | 1.15 | -1.11 | -0.45 | -0.81 | 1.36 | 1.36 | 0.10 | -0.44 |
NA | Zm00001eb304780 | 1.32 | -0.41 | -1.03 | -1.08 | 1.18 | 1.44 | -0.30 | 0.20 |
Histone H2b (Umc1268) | Zm00001eb368020 | 1.23 | -0.16 | -1.14 | -1.21 | 1.19 | 1.31 | 0.18 | -0.18 |
Cryptochrome3 | Zm00001eb382070 | 2.22 | -1.13 | -0.97 | -1.02 | 0.99 | 0.50 | 0.54 | 1.10 |