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Fig. 2 | BMC Genomics

Fig. 2

From: Comparative genome analysis of mycobacteria focusing on tRNA and non-coding RNA

Fig. 2

Core gene phylogeny of Mycobacteria. A phylogeny based on “387 core genes” present in all mycobacteria was calculated as described in Methods. The tree is divided into slow (SGM; orange) and rapid growing mycobacteria (RGM; green). Black indicates that no information was available to determine growth rate (“unknown”). Bootstrap support values from 1000 cycles are indicated as colored dots at the respective nodes (100%) or by their actual values (below 100%). Mycobacterial clades are indicated by boxes and vertical text to the right of the boxes refers to the clade names while species positioned outside the boxes represent single species clades. Pairwise ANI values were calculated for all the genomes; branches of the tree are colored according to these values (see legend to the left and Table S4). We emphasize to color the branches on both sides of a connecting node, all species on one side of the node must have ANI values within the range compared with all other species on the other side of the node and vice versa. Individual genomes may have ANI-values that are higher than the range of values indicated by the coloring compared with one or more genomes on the other side of the node. Underlined species were those sequenced in this study, while species marked with black dots were previously reported [6, 24,25,26,27]. *Marks the positioning of the M. farcinogenes DSM 43637 strain sequenced in this study while the other M. farcinogenes DSM 43637 strain corresponds to the available genome sequence at the NCBI database, see main text for details. ##Marks the isolate/genome sequence M. microti OV254, which based on our combined data should be considered as a M. simiae strain (see Discussion).

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