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Fig. 1 | BMC Genomics

Fig. 1

From: A map of cis-regulatory modules and constituent transcription factor binding sites in 80% of the mouse genome

Fig. 1

Evaluation of the TF ChIP-seq datasets. A Number of datasets collected in each cell/tissue types sorted in the descending order. B Number of datasets collected for each ChIP-ed TF sorted in the descending order. C Number of peaks in each dataset sorted in the ascending order. D Distribution of the lengths of originally called binding peaks in the 8,884 datasets. E Heatmap of overlaps of the 1,000 bp binding peaks between each pair of the datasets. The highlighted cluster a is formed by 50 datasets for Ctcf and varying number of datasets for its cooperative TFs Rad21, Stag1, and Smc1A in different cell/tissue types. F A blowup view of cluster b highlighted in E, formed by 88 datasets for 20 TFs. G Known physical interactions between 13 of the 20 TFs for which the 88 datasets form the cluster in F

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