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Fig. 6 | BMC Genomics

Fig. 6

From: A map of cis-regulatory modules and constituent transcription factor binding sites in 80% of the mouse genome

Fig. 6

dePCRM2 might correctly predict the lengths of most CRMs. A Boxplots of the ratio of the length of a recalling CRM over that of its recalled VISTA enhancers and FANTOM5 enhancers. The p value was calculated using the Mann–Whitney U test. B Venn diagram showing the number of nucleotide positions shared by recalling CRMs and recalled VISTA enhancers, and the number of positions specific to the recalling CRMs and the recalled VISTA enhancers. C Distributions of phyloP scores of the positions shared by the recalling CRMs and the recalled VISTA enhancers, and of the positions specific to the recalling CRMs and to the recalled VISTA enhancers. The difference between the distributions of the shared and VISTA specific positions is significantly different, p < 2.2 × 10–302, K-S test

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BMC Genomics

ISSN: 1471-2164

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