Skip to main content

Table 2 IslandViewer4 hits predicted in Serratia entomophila isolate 626 with putative function assigned

From: Genome sequence of the entomopathogenic Serratia entomophila isolate 626 and characterisation of the species specific itaconate degradation pathway

Island Numbera

Loci

Size

Predicted functionb

1

KFQ06_00260-KFQ06_00630

51,901

Translation, transcription, carbohydrate transport and metabolism

2

KFQ06_01515-KFQ06_01775

54,030

Translation, transcription, carbohydrate transport and metabolism

3

KFQ06_02615-KFQ06_02640

4,944

Defence, transcription

4

KFQ06_02885-KFQ06_02935

8,988

Cell motility

5

KFQ06_04470-KFQ06_04485

7,213

Intracellular secretion

6

KFQ06_04445-KFQ06_04470

4,334

Intracellular secretion, transcription

7

KFQ06_05475-KFQ06_05500

4,229

Cell motility, intracellular secretion

8

KFQ06_07835-KFQ06_07890

6,651

Cell membrane biogenesis

9

KFQ06_07940-KFQ06_07970

8,424

Cell membrane biogenesis

10

KFQ06_08770-KFQ06_08805

9,015

Cell motility, defence

11

KFQ06_09240-KFQ06_09275

9,244

Transposase, translation, nucleotide metabolism

12

KFQ06_09525-KFQ06_09545

5,169

Itaconate degradation operon

13

KFQ06_11450-KFQ06_11490

8,166

General function prediction

14

KFQ06_12570-KFQ06_12605

5,633

Phagec

15

KFQ06_14355-KFQ06_14415

6,536

Type VI secretion system

16

KFQ06_14535-KFQ06_14565

4,071

Carbohydrate transport and metabolism; replication, recombination, and repair

17

KFQ06_14885-KFQ06_15005

32,322

Defence mechanism

18

KFQ06_15670-KFQ06_15700

4,679

Phagec, carbohydrate transport and metabolism

19

KFQ06_18195-KFQ06_18215

4,065

Incomplete phagec, transcription

20

KFQ06_18250-KFQ06_18300

7,393

Incomplete phagec, defence mechanisms

21

KFQ06_19095-KFQ06_19185

5,236

Defence mechanisms, cell wall biosynthesis, cell motility

22

KFQ06_20090-KFQ06_20120

16,897

Secondary metabolite biosynthesis, general function proteins

23

KFQ06_20170-KFQ06_20175

4,742

Intracellular secretion

24

KFQ06_20535-KFQ06_20760

37,287

Phagec, defence, phage 2 (Fig. 3)

25

KFQ06_20865-KFQ06_20895

3,392

Phagec

  1. Predicted genomic islands in S. entomophila 626 by any prediction method corresponding with Fig. 8
  2. Prediction methods are Islandpath-DMOB, IslandPick, SIGI-HMM
  3. a Number corresponds to the location annotated in Fig. 6
  4. b Summary of COG categories assigned to loci
  5. c Predicted using Phaster