Table 1 Association of Core-MARs with repeat elements
From: Structural and developmental dynamics of Matrix associated regions in Drosophila melanogaster genome
Types of Core-MARs | Number | Associated with repeats | Repeat Type | ||||||
|---|---|---|---|---|---|---|---|---|---|
Number | % | LINE | LTR | DNA | SSR | Sat | rDNA | ||
Intergenic | 703 | 665 | 95 | 220 | 256 | 35 | 22 | 122 | 10 |
Promoter | 112 | 69 | 62 | 6 | 13 | 9 | 27 | 7 | 7 |
5’UTR | 95 | 16 | 17 | 0 | 0 | 0 | 16 | 0 | 0 |
Exon | 59 | 19 | 32 | 0 | 1 | 2 | 10 | 1 | 5 |
Intron | 297 | 280 | 94 | 75 | 117 | 43 | 16 | 29 | 0 |
3’UTR | 11 | 8 | 73 | 1 | 4 | 0 | 2 | 1 | 0 |
Total | 1277 | 1057 | 83 | 302 | 391 | 89 | 93 | 160 | 22 |