Table 3 Topmost up- and down-regulated genes (with annotation) in symbiotic nematodes as compared to axenic nematodes

Down-regulated transcripts

1.

TRINITY_DN6295_c0_g10_i1--LEN=742

-11.5

COII

P29870

Cytochrome c oxidase subunit 2

2.

TRINITY_DN3587_c0_g1_i1--LEN=1046

-10.55

RPLP0

Q95140

60S acidic ribosomal protein P0

3.

TRINITY_DN7104_c0_g6_i1--LEN=722

-10.51

TEF-1

P28295

Elongation factor 1-alpha

4.

TRINITY_DN7997_c0_g4_i3--LEN=1041

-10.47

RpL8

P41569

60S ribosomal protein L8

5.

TRINITY_DN6295_c0_g4_i1--LEN=1062

-10.41

MT-CYB

Q9XNX3

Cytochrome b

6.

TRINITY_DN6392_c1_g2_i4--LEN=1245

-10.31

RPL11B

P42794

60S ribosomal protein L11-2

7.

TRINITY_DN5202_c0_g4_i1--LEN=677

-10.16

RPL13A

Q3SZ90

60S ribosomal protein L13a

8.

TRINITY_DN6050_c0_g4_i1--LEN=522

-10.09

RPL23AA

Q8LD46

60S ribosomal protein L23a-1

9.

TRINITY_DN7721_c0_g10_i1--LEN=507

-10.08

RPS19S

P39698

40S ribosomal protein S19S

10.

TRINITY_DN3803_c0_g2_i1--LEN=1053

-10.06

-

Q93134

Guanine nucleotide-binding protein subunit beta-2-like 1

Up-regulated transcripts

1.

TRINITY_DN821_c0_g1_i1--LEN=940

3.93

col-19

P18835

Cuticle collagen 19

2.

TRINITY_DN4551_c0_g2_i3--LEN=723

3.32

gsnl-1

A8XV95

Gelsolin-like protein 1

3.

TRINITY_DN6239_c0_g7_i1--LEN=5066

3.23

vit-6

P18948

Vitellogenin-6

4.

TRINITY_DN5914_c2_g3_i1--LEN=1072

3.10

col-34

P34687

Cuticle collagen 34

5.

TRINITY_DN4902_c0_g1_i1--LEN=2737

3.07

EHMT1

Q9H9B1

Histone-lysine N-methyltransferase EHMT1

6.

TRINITY_DN6718_c0_g2_i7--LEN=855

2.96

TUBA2

P33624

Tubulin alpha-2 chain

7.

TRINITY_DN1416_c0_g2_i1--LEN=1071

2.89

clec-87

A8WUV1

C-type lectin domain-containing protein 87

8.

TRINITY_DN2156_c0_g1_i1--LEN=1108

2.86

moe-3

Q9XV46

CCCH-type zinc finger protein moe-3

9.

TRINITY_DN992_c0_g1_i2--LEN=1401

2.81

tbx-8

Q22292

T-box transcription factor tbx-8

10.

TRINITY_DN39_c0_g1_i2--LEN=1805

2.76

APX1

Q05431

L-ascorbate peroxidase 1, cytosolic