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Fig. 1 | BMC Genomics

Fig. 1

From: Detection of potential functional variants based on systems-biology: the case of feed efficiency in beef cattle

Fig. 1

The pipeline for PFV detection. Step-by-step details of the material and methods for obtaining potential causal variants. a Selection of animals for feed efficiency and sample preparation; b RNA-seq analysis (paired end); c Data treatment and call for variants by the GATK tool; d Statistical analysis and genetic association using Plink; e Identification of the impact and consequence of variants by the Ensembl VEP online; f Functional enrichment using Panther (GO); g Validation of results using the GWAS of an independent population

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