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Table 1 Number of variants called for feed efficiency in Nellore beef cattle from the five different organs

From: Detection of potential functional variants based on systems-biology: the case of feed efficiency in beef cattle

Organ

Total variant calling

Variants after filteringb

Significant variants

Impact on protein function

Moderate

High

Liver

484,589

46,268

1110

263

6

Muscle

459,057

80,818

2540

501

25

Hypothalamus

1,037,253

143,540

4586

834

24

Pituitary

846,809

125,141

3782

847

21

Adrenal

745,878

130,738

3575

657

10

Total

3,573,586

526,505

15,593

3102

86

Uniquely variantsa

2,000,936

227,225

9986

1995

78

  1. The results of the Total variant number, Filter, and Significant variants are in quantities, in other words, the number of variants that can be SNPs or/and INDELs. a This data reports the number of uniquely variants since there are variants detected in more than one tissue. b Variants were filtered for MAF and call rate