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Table 2 Variants distributed according to the consequences on protein sequence

From: Detection of potential functional variants based on systems-biology: the case of feed efficiency in beef cattle

Consequence a

Organ

Missense

Splice region

Splice donor

Frameshift

Stop gained

Inframe insertion

Inframe deletion

Splice acceptor

Start lost

Stop lost

Intron variant

Start retained

Affected genes

Liver

260

2

3

3

1

3

–

–

–

–

–

–

120

Muscle

494

24

8

14

–

3

4

1

1

1

–

–

211

Hypothalamus

818

11

11

10

3

10

9

–

–

–

–

–

352

Pituitary

823

9

5

12

3

10

17

–

2

1

–

2

343

Adrenal

635

6

2

3

2

9

15

3

–

–

2

–

286

Total

3030

52

29

42

9

35

45

4

3

2

2

2

1312

  1. a The number of consequences of the variants can vary, as a variant can have more than one consequence
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BMC Genomics

ISSN: 1471-2164

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