Table 1 Genome assembly metrics for the assembly of Pantoea agglomerans DAPP-PG 734 genome. The Edena assembly was reported before [21]
From: Comparative genomics to examine the endophytic potential of Pantoea agglomerans DAPP-PG 734
Assembly name | ASM71021v1 | ASM71021v2 |
|---|---|---|
Sequencing technology | Illumina MiSeq | Illumina MiSeq + Oxford Nanopore MinION |
Assembler | Edena v.3 dev. 120,926 | Unicycler v.4.4.8 |
Coverage | 37 ×  | 141 ×  |
Total sequence length (bp) | 5′365′929 | 5′396′424 |
Number of contigs | 195 | 5 |
N50 | 53′927 | 4′410′564 |
G + C content (%) | 54.6 | 54.7 |
Annotation pipeline | - | Bakta v.1.2.4 |
Number of | ||
  CDS | 3′697 | 4′991 |
  rRNAs (5S, 16S, 23S) | 36 | 22 |
  tRNAs | 71 | 76 |
  BUSCO score (%) | 98.6 | 99.5 |