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Table 3 Imprinted gene over-representation in neural lineage types [29]

From: Systematic investigation of imprinted gene expression and enrichment in the mouse brain explored at single-cell resolution

Cell Population Identity (Abbr.)

Up Reg

(14,498)

IG

(85)

ORA p

ORA q

Mean FC

IG

Mean FC

Rest

GSEA p

GSEA q

No. IGs with highest expression

Neuroendocrine cells (NendC)

3868

47

2.12E-08

3.82E-07

11.88

5.42

0.0017

0.0051

26

Mature Neurons (all types) (mNEUR)

2968

32

0.0002

0.0035

8.80

9.28

-

-

2

 Arachnoid barrier cells (ABC)

2287

20

0.0396

0.7120

16.84

22.63

-

-

7

 Tanycytes (TNC)

1279

12

0.0692

1

6.64

12.01

-

-

8

 Vascular and leptomeningeal cells (VLMC)

1714

15

0.0724

1

15.06

13.03

0.0468

0.1404

4

 Oligodendrocyte precursor cells (OPC)

1524

13

0.1067

1

3.03

7.17

-

-

1

 Pericytes (PC)

1801

14

0.1649

1

8.20

8.22

-

-

2

 Olfactory ensheathing glia (OEG)

1086

9

0.1848

1

7.95

26.03

-

-

1

 Oligodendrocytes (OLG)

1183

9

0.2561

1

3.73

12.91

-

-

5

Choroid plexus epithelial cells (CPC)

2602

17

0.3524

1

7.43

19.34

-

-

5

 Hemoglobin-expressing vascular cells (Hb_VC)

1798

11

0.4889

1

5.25

6.33

-

-

3

 Vascular smooth muscle cells (VSMC)

3006

17

0.6093

1

8.94

6.71

0.1376

0.4128

5

 Astrocyte-restricted precursors (ARP)

1445

8

0.6214

1

4.50

5.09

-

-

1

 Neural stem cells (NSC)

1009

5

0.7138

1

4.00

4.09

-

-

0

 Ependymocytes (EPC)

3233

17

0.7346

1

15.04

53.27

-

-

4

 Endothelial cells (EC)

1455

7

0.7619

1

5.80

8.54

-

-

0

 Hypendymal cells (HypEPC)

1525

6

0.8946

1

17.24

20.80

-

-

5

 Neuronal-restricted precursor (NRP)

2339

10

0.8979

1

3.07

10.20

-

-

1

 Astrocytes (ASC)

1384

4

-

-

2.22

6.04

-

-

0

 Dendritic cells (DC)

1209

1

-

-

3.50

16.02

-

-

1

 Immature Neurons (ImmN)

652

4

-

-

3.37

5.79

-

-

0

 Macrophages (MAC)

1222

2

-

-

3.47

21.56

-

-

0

 Microglia (MG)

1342

3

-

-

19.28

19.22

-

-

3

 Monocytes (MNC)

947

2

-

-

16.49

19.13

-

-

1

 Neutrophils (NEUT)

519

2

-

-

9.18

62.13

-

-

0

  1. Cell lineage identities for the cells used in analysis. All other column descriptions can be found in the legend of Tables 1 and 2