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Fig. 4 | BMC Genomics

Fig. 4

From: Genomic landscape of prominent XDR Acinetobacter clonal complexes from Dhaka, Bangladesh

Fig. 4

a) Virulome profiles of 15 Acinetobacter genomes. Virulence gene distribution was determined in by BLAST against 135 A. baumannii virulence genes in the VFDB database. Only those genes with the e-value below 1e−5, coverage > 90% and identity > 60% were considered. The colours depicted in the heatmap indicate the number of hits for each gene as explained in the legend. b) Genetic variance in virulence genes of Acinetobacter spp. strains calculated over three sets. Set A contains genes associated with all 15 Acinetobacter genomes as well as the VFDB reference gene. Set B contains all genes from Set A except for those associated with A. nosocomialis genome NGCE1007. Set C contains only those genes associated with the 14 A. baumannii genomes, i.e., sans the VFDB reference gene. The genetic variance was calculated with DnaSP in terms of the ratio SNP/bp where bp stood for the length of the aligned gene. The SNP/bp ratio is represented with a colour scale as shown in the legend

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