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Table 6 The number of significant dSNPs (hQTL and asbQTL) which were in the peak they were associating with in each analysis. The number of peaks with the same hQTL/asbQTL in the peak and the number of times a SNP in the peak had the same or lower p-value in the asbQTL analysis than the best hQTL

From: Genetic variation in histone modifications and gene expression identifies regulatory variants in the mammary gland of cattle

 

H3K27ac

H3K4Me3

H3K4Me1

Peaks with hQTL

11,374

23,263

24,119

hQTL variant in the peak

223 (2%)

2642 (11%)

4770 (20%)

Peaks with asbQTL

7963

15,918

20,555

asbQTL variant in the peak

490 (6%)

4976 (31%)

4944 (24%)

Peaks with the same hQTL/asbQTL (in the same direction)

59

1975

2375

hQTL/asbQTL variant in the peak

46 (78%)

1525 (77%)

1830 (77%)

Peaks with top significant hQTL tested in asbQTL

2844

10,931

15,150

PeakSNP better or the same as hQTL in asbQTL analysis

2029 (71%)

8263 (75%)

12,168 (80%)