Beta-galactosidase gene family genome-wide identification and expression analysis of members related to fruit softening in melon (Cucumis melo L.)

Pan, Haobin; Sun, Yinhan; Qiao, Miaomiao; Qi, Hongyan

doi:10.1186/s12864-022-09006-5

Table 1 BGAL genes in Cucumis melo L. and their annotated information

From: Beta-galactosidase gene family genome-wide identification and expression analysis of members related to fruit softening in melon (Cucumis melo L.)

Clade^a	Name^b	Accession^c	Chromosome location^d	CDS (bp)^e	Protein (aa)^f	Mw (kDa)^g	Theoretical pI^h	GRAVYⁱ	Subcellular location
A	CmBGAL1	MELO3C013055.2	chr04: 16717893 ~ 16,724,281 (+)	2499	832	92,701.76	7.97	−0.245	plasma membrane
	CmBGAL2	MELO3C015471.2	chr02: 2015336 ~ 2,018,327 (+)	2160	719	80,740.12	8.62	− 0.284	extracellular space
	CmBGAL3	MELO3C015469.2	chr02: 1973422 ~ 1,979,527 (−)	2115	704	78,350.45	6.94	−0.202	extracellular space
	CmBGAL4	MELO3C015470.2	chr02: 2002073 ~ 2,007,432 (+)	2172	723	80,714.24	8.24	−0.224	plasma membrane
B	CmBGAL18	MELO3C023335.2	chr11: 1715509 ~ 1,722,003 (+)	2538	845	95,018.95	8.08	−0.353	extracellular space
	CmBGAL19	MELO3C003792.2	chr04: 4395761 ~ 4,401,392 (−)	2535	844	93,015.73	8.33	−0.216	extracellular space
	CmBGAL20	MELO3C016409.2	chr07: 24227139 ~ 24,234,240 (+)	2541	846	94,412.33	7.78	−0.235	extracellular space
	CmBGAL21	MELO3C007872.2	chr08: 5904316 ~ 5,910,615 (+)	2565	854	94,637.49	7.24	−0.237	plasma membrane
C	CmBGAL16	MELO3C005054.2	chr12: 3822196 ~ 3,829,733 (−)	2097	698	76,687.45	6.37	−0.244	plasma membrane
C	CmBGAL17	MELO3C006301.2	chr06: 2352074 ~ 2,364,404 (+)	2523	840	94,121.93	6.51	−0.261	extracellular space
D	CmBGAL13	MELO3C023188.2	chr11: 5193 ~ 15,903 (+)	2094	697	78,652.05	7.00	−0.240	extracellular space
E	CmBGAL14	MELO3C010636.2	chr03: 8459760 ~ 8,467,653 (−)	2622	873	97,630.79	6.57	−0.332	extracellular space
E	CmBGAL15	MELO3C013360.2	chr01: 16900517 ~ 16,905,789 (+)	2259	752	84,409.23	8.05	−0.359	extracellular space
F	CmBGAL5	MELO3C006540.2	chr06: 4015808 ~ 4,021,686 (+)	2562	853	96,873.30	9.19	−0.501	extracellular space
	CmBGAL6	MELO3C015540.2	chr02: 2657588 ~ 2,661,148 (+)	2496	831	93,519.70	5.20	−0.308	plasma membrane
	CmBGAL7	MELO3C012947.2	chr04: 14973846 ~ 14,976,326 (+)	2481	826	92,921.02	6.18	−0.339	extracellular space
	CmBGAL8	MELO3C026513.2	chr03: 24492677 ~ 24,495,192 (+)	2475	824	92,584.84	8.75	−0.396	extracellular space
	CmBGAL9	MELO3C033812.2	chr09: 21595815 ~ 21,598,283 (−)	2469	822	91,930.90	7.70	−0.339	extracellular space
	CmBGAL10	MELO3C009997.2	chr02: 11301269 ~ 11,303,743 (+)	2475	824	92,304.28	6.85	−0.339	extracellular space
	CmBGAL11	MELO3C015321.2	chr02: 743784 ~ 747,625 (+)	2823	940	105,903.53	6.74	−0.416	nucleus
G	CmBGAL12	MELO3C025840.2	chr04: 17683384 ~ 17,693,548 (+)	2205	734	83,458.13	7.69	−0.087	endomembrane system

^a Clade distribution according to phylogenetic clustering
^b Names given by nomenclature system to BGAL genes of Cucumis melo L
^c Gene accession of CmBGALs in CuGenDB
^d Gene chromosome location and direction, “+” means 5′-3′, “-” means 3′-5′
^e Length of coding sequence
^f Length of protein sequence
^g Molecular weight
^h Theoretical isoelectric point
ⁱ Grand average of hydropathicity index

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ISSN: 1471-2164

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