Table 1 Genome statistics of C. niphades n. sp. and other selected Caenorhabditis species
C. niphades (v5.5) | C. elegans (WBPS14) | C. bovis (v1.0) | C. afra (JU1286_v1) | C. sulstoni (JU2788_v1) | C. japonica (WBPS16) | C. japonica (v2.0) | |
|---|---|---|---|---|---|---|---|
Assembly size (Mb) | 59.0 | 100.3 | 62.7 | 65.6 | 65.1 | 166.3 | 141.2 |
Number of scaffolds | 6 | 6 | 35 | 1898 | 2044 | 662 | 39 |
Average (kb) | 5900 | 14,327 | 1792 | 34.6 | 31.8 | 8.8 | 3840 |
Largest scaffold (kb) | 12,682 | 20,924 | 10,858 | 1054 | 1009 | 1100 | 26,862 |
N50 (kb) | 9392 | 17,493 | 7558 | 176 | 137 | 94 | 23,717 |
Gaps (kbp) | 3 | 0 | 0 | 204 | 381 | 12,198 | 26 |
GC (%) | 45.4 | 35.4 | 38.2 | 47.1 | 46.4 | 39.2 | 39.2 |
Num. coding genes | 16,929 | 20,277 | 13,128 | 19,834 | 18,192 | 29,935 | N/A |
BUSCO genome completeness (%) single/duplicated | 97.4/0.5 | 98.8/0.5 | 94.2/1.6 | 97.0/0.5 | 97.9/0.5 | 92.4/1.6 | 94.6/0.3 |