Table 3 Numbers of hormone-related and stress-related cis-elements in the upstream 2 kb regions of StGRF genes
cis-elements | Gene name | |||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
StGRF1 | StGRF2 | StGRF3 | StGRF4 | StGRF5 | StGRF6 | StGRF7 | StGRF8 | StGRF9 | StGRF10 | StGRF11 | StGRF12 | StGRF13 | StGRF14 | StGRF15 | StGRF16 | StGRF17 | StGRF18 | |
Hormone-related cis-elements | ||||||||||||||||||
ABRE | 2 | 0 | 0 | 0 | 1 | 1 | 1 | 1 | 1 | 5 | 2 | 4 | 4 | 0 | 4 | 4 | 3 | 3 |
AuxRR core | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 1 |
TGA-element | 1 | 1 | 1 | 1 | 0 | 0 | 2 | 2 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
TGACG-motif | 2 | 2 | 2 | 2 | 1 | 1 | 0 | 0 | 0 | 1 | 1 | 3 | 0 | 0 | 2 | 2 | 0 | 0 |
CGTCA-motif | 2 | 2 | 2 | 2 | 1 | 1 | 0 | 0 | 0 | 1 | 1 | 3 | 0 | 0 | 2 | 2 | 0 | 0 |
ERE | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 3 | 5 | 0 | 0 | 1 | 0 | 2 | 2 | 4 | 4 |
P-box | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
TATC-box | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
TCA-element | 0 | 0 | 0 | 0 | 3 | 3 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 2 | 2 |
Stress-related cis-elements | ||||||||||||||||||
ARE | 1 | 2 | 2 | 2 | 5 | 5 | 1 | 1 | 2 | 0 | 0 | 2 | 0 | 2 | 1 | 1 | 3 | 3 |
LTR | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 2 | 0 | 0 | 0 | 0 |
MBS | 1 | 0 | 0 | 0 | 1 | 1 | 0 | 0 | 1 | 0 | 3 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
TC-rich repeats | 0 | 1 | 1 | 1 | 2 | 2 | 1 | 1 | 0 | 0 | 0 | 0 | 5 | 1 | 0 | 0 | 1 | 1 |
W-box | 3 | 0 | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 1 | 2 | 2 | 0 | 0 |