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Table 2 Cichlid genomes used for annotation projection with the reat homology (https://github.com/EI-CoreBioinformatics/reat) pipeline. All publically available versions were downloaded from Ensembl

From: Chromosome-level genome sequence of the Genetically Improved Farmed Tilapia (GIFT, Oreochromis niloticus) highlights regions of introgression with O. mossambicus

Species

Genome Version

Citation

Number of PC genes

Number of transcripts

Amphilophus citrinellus

Midas_v5

[62]

23,696

32,597

Astatotilapia burtoni

AstBur1.0

[17]

25,955

52,846

Astatotilapia calliptera

fAstCal1.2

[63]

27,018

42,580

Metriaclima zebra

M_zebra_UMD2a

[64]

27,187

39,681

Neolamprologus brichardi

NeoBri1.0

[17]

23,596

32,961

Oreochromis niloticus

O_niloticus_UMD1

[16]

28,142

75,508

Oreochromis mossambicus

Oreochromis_mossambicus_EIV1

This study

37,000

55,099

Oreochromis aureus

ASM587006v1

[65]

24,464

60,785

Pundamilia nyererei

PunNye1.0

[17]

23,501

32,924