In the battle of the disease: a transcriptomic analysis of European foulbrood-diseased larvae of the Western honey bee (Apis mellifera)

Table 1 Group contrasts of significantly differentially expressed genes and transcripts

Comparisons	DE genes	DE transcripts
Control 3 dpi vs. Infected 3 dpi	168	100
Control 6 dpi vs. Infected 6 dpi	337	341
Control 3 dpi vs. Control 6 dpi	2255	3012
Infected 3 dpi vs. Infected 6 dpi	1848	2473
Control 6 dpi vs. secondary Infection 6 dpi	601	675
Infected 6 dpi vs. secondary Infection 6 dpi	81	65
3 dpi vs. 6 dpi	1871	3284
Control vs. Infected	101	73

p < 0.05, FDR-corrected; Fold change: −1 < log₂FC > 1; 3 dpi vs 6 dpi = (Cont 3 dpi + Inf 3 dpi)/2 - (Cont 6 dpi + Inf 6 dpi + secInf 6 dpi)/3; Control vs. Infected = (Cont 3 dpi + Cont 6 dpi)/2 - (Inf 3 dpi + Inf 6 dpi)/2; For details on group contrast statistics see Table S 11 (Additional file 13)

ISSN: 1471-2164