Table 1 Quality control results of sequencing data
Group | Sample | Total reads | Clean reads | Bases | Error rate | Q20 | Q30 | GC content |
|---|---|---|---|---|---|---|---|---|
24 hpi | BM24hT1 | 13,799,657 | 13,426,802 | 0.690G | 0.00% | 99.85% | 99.58% | 49.17% |
BM24hT2 | 14,941,957 | 14,168,878 | 0.747G | 0.01% | 99.74% | 99.30% | 49.27% | |
BM24hT3 | 15,314,418 | 14,884,866 | 0.766G | 0.00% | 99.85% | 99.58% | 49.74% | |
BM24hC1 | 20,323,844 | 19,639,690 | 1.016G | 0.01% | 99.75% | 99.30% | 49.01% | |
BM24hC2 | 12,442,986 | 12,108,245 | 0.622G | 0.00% | 99.83% | 99.54% | 49.11% | |
BM24hC3 | 15,238,083 | 14,861,267 | 0.762G | 0.00% | 99.82% | 99.48% | 49.06% | |
96 hpi | CM96hT1 | 18,730,690 | 18,196,734 | 0.937G | 0.01% | 99.65% | 99.08% | 49.15% |
CM96hT2 | 17,725,623 | 17,224,265 | 0.886G | 0.01% | 99.75% | 99.34% | 48.92% | |
CM96hT3 | 10,691,329 | 10,376,809 | 0.535G | 0.00% | 99.86% | 99.61% | 49.60% | |
CM96hC1 | 16,028,228 | 15,694,523 | 0.801G | 0.01% | 99.71% | 99.28% | 49.47% | |
CM96hC2 | 15,644,646 | 15,229,638 | 0.782G | 0.00% | 99.88% | 99.64% | 48.99% | |
CM96hC3 | 13,380,695 | 13,063,955 | 0.669G | 0.00% | 99.82% | 99.51% | 49.02% | |
36 dpi | DM36dT1 | 10,596,623 | 10,347,631 | 0.530G | 0.00% | 99.86% | 99.60% | 49.23% |
DM36dT2 | 18,457,852 | 17,889,201 | 0.923G | 0.01% | 99.58% | 98.91% | 49.07% | |
DM36dT3 | 15,081,507 | 14,645,379 | 0.754G | 0.01% | 99.51% | 98.85% | 49.57% | |
DM36dC1 | 14,649,980 | 14,313,896 | 0.732G | 0.01% | 99.74% | 99.35% | 48.83% | |
DM36dC2 | 15,081,270 | 14,485,680 | 0.754G | 0.01% | 99.72% | 99.30% | 49.01% | |
| Â | DM36dC3 | 14,705,342 | 14,384,759 | 0.735G | 0.01% | 99.76% | 99.34% | 49.20% |