Table 3 Gene prediction from the putative new transcripts. The table shows the chromosome, position, number of exons, length and sequence of the putative new transcripts. In addition, InterPro prediction and observation from BLAST against NCBI nr database are indicated
Predicted_CDS | Chromosome | Position | exon | length (aa) | sequence | InterPro | Observation |
|---|---|---|---|---|---|---|---|
1 | 1 | 4,418,621 | 2 | 63 | MARKGSNKREIYTRSSLSASLYSWLAGGGGSSGGVVAVDHDADAADDSDDAGDDAGDAGD GRG | nothing | |
2 | 1 | 5,197,730 | 2 | 170 | MSSTERLLTLAMPLKHEMELMELDVSPKPISVTSSEDNDATAKPHHNEQNRRYSTTNRLD PQEAEPAALEETSYAQQTTDPETTWSPDGADDEGFHVEDDNECASTLPPSPELEAVEDEE MAGWVKEQQTSQPSLRLYRGSPGDILVMARTAAPSFPTYYPRELNMDDEC | nothing | |
3 | 1 | 5,382,147 | 3 | 165 | MKTAILLAVLFVGASSLPVAPSLEAKVYLSLSFPTVDATSTRAQWVSSYGNKPPKKAQEN EPTVDGTSTRGQWVSSHGNNPPKKFQEGPTVDATSTRAQCVSSYGNKPPKKGASFSDHWL PVGPGYLDLDALESGYHAHLMIMHDSTSWLQSGMTAIKRFMRRFA | Signal peptide, transmembrane domain | |
4 | 1 | 5,504,377 | 1 | 395 | MADLIDLSQQSPSSLSPWEPSVLLQLWNPDVQAWSCLGWTRAERRCRRVLSQAKREATMR ILPDLGLSGSHDVDFETELLGELSHECLCRYHSDDETAKTLVEQWKTALKKARSQYQKTE RTTSKESLSTDSVAHHARTQSPPLSSTESEETTEVMLKDHPEDSTVLKQEAIVEQTIEQS TSASSPRLNSTESASPPAGKTPPKLGFSTPVPGATPSKSPEVSKSTPLFDFTQLFQTPGS HKPTVNPHKGTPAPAAFKYDQSRTPGTSSTADMSHSSVASLSPNENTPAFVFTSSSTPSR PPATTEGSLPKSEDPFRYSGSPIREAGQRIIKSLREIGDMEVPNELDGDISGLGQSIERL RLRLEKGRSLCLSGPDAGSEGDDETSDQDGKRRME | nothing | nothing significant found with BLASTp against NCBI database |
5 | 1 | 7,676,610 | 1 | 212 | MPASDITIDLDRSSTPFPRSRRSERAHEQVEDFNRRSSSPRRFTSTPTRSRRLSPSPTRY RSAATIARSPPRYRSPTRITSAPRPRRISPSPLRHRSPIRLPSSTSRRAPFPSPYFKETR ITEARRTTTYHPTSPVSRYTETRTTYRTPISRPRTPPRGSIGSPSRRITSPRLVDIRSSS EIYSSSRRYDSYPSTTRSPGRSTDRSLFTRRY | nothing | |
6 | 1 | 7,835,241 | 3 | 94 | MSGYPPQQGGYYPQAPPQGYPPQGYPPPDGGYPPQGYPPQGYPPPQQQMQYQQAPPPKEE KSHGCLYTCVAAMCCCWLCGETCECCLECLDCCF | rhodopsin C-terminal tail | nothing significant found with BLASTp against NCBI database |
7 | 2 | 1,526,413 | 2 | 214 | MANIKTETADEGVTAADPGAIKKAPFSMTESELREILVLAIDRHPAIHPIVQRHLDRLRD NNLGGFQDDFEKIRCEVYACASEPCFSDPKAIGACIKRYFEKLLNVATRESPYETRYSAV EWFLRVLNLLVFTSDPHDVRKEIWSHTDGSCLKLVMLVCRFRTAERGRLLRDHNSLIMLK MDLITANAKDLPELLREFEPTIHVIKSWRAESRG | nothing | |
8 | 3 | 822,817 | 1 | 357 | MGYEWNGDPTILIVVIACSVCFGWVPIITVVSIVRHCRARLRAKRGSNGTNSDAESQGGR PSTAPDVPKPLQTYHPSSTKGLERSASSRTRSSADGYDLKRVDTNSSWNPIRHSFHYDNE SLWGGDGLSRSNSRHRPPYFPTHVHNTTPSLSRPASIRSVASSHRQQSRSRRSSMASNSD NAPAAFQINDTYYDTTPLPNVTRTVNPVVASSSTPTSSKGPGQAPQQRQQKQPKQDNPHP PQRNRRTRHSLDARGDSDSLTRDISRPNTSMTRREVEEYEDLDNQKQKATHRSHRPPRPG SASRRGSHSAPGGSEETDDDLSMAGALPPAKLPPRRASLHAQTFERPAWLHEEPHAM | transmembrane domain | nothing significant found with BLASTp against NCBI database |
9 | 3 | 1,121,553 | 2 | 317 | MHDCEFEENPAGFCCAVETVELHAAGRSYFYSSFEGASCYRQDFAFFRNLQHISLRNFFD DPNRSRQQTVQLLRHSPNLHRLELGLSAKAVVRQLEREGSFGVFVHFFDRLCDEYAESGG QPLRLTHLGLFDAMWVWKPESLRKKPADLAFLQEVRLNTETIEDCITDNLVDLFDSEALS GYAVLVETDRGSKYGPAYLVGARELEMRRPRTPMQLAEMSLVLGGTWGNQKLLAATTRHS LQGLVVNMNRPDPRRSLDFLLAPLQNMHRLARLWIVSANMYKDLPLLTKAAQKGGCRVSC LALHRDRVALLGGNWQN | nothing | nothing significant found with BLASTp against NCBI database |
10 | 3 | 3,727,340 | 4 | 215 | MEPRETYREFGSRAAGRHRRKTLGSTRQTVRDSCKVNGGNDDTSWLRTPPPHCPCQKLPV TTGLREEEYAGKQTQAREESDGMWVVVERKEGFDRQPGGDGCFQSGERKRGFSGGWRRLS STTTTTTTTTTATTATTTTTTTTDEEGEHREEQQETEETGGCGGGSKARPHSLGTVEEKK PNKKMAGDYPEVLRKFSLPLSVQGIGSMGLGFPMP | nothing | |
11 | 4 | 2,328,575 | 2 | 69 | MVISMTQRNIPGIWRSGGGRGQDNSAPLPQLQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ PQPQPRLQQ | nothing | |
12 | 4 | 3,371,922 | 2 | 373 | MCQGTIYDFWCPCIFHAPSTSFYLQFDIHPPDFNYTFTRRPTTNPLKAHLSKSSHSIVYS QHCAAYKFCDDYLHSEGFNPGDVFDMGGLCPAGHQVTYEREAFISSRLCDACISGKCEEN MEFAGVKTVRRSRYGWRSREEEREGKRRSRSRPGRGVSPAGSVRSFDSTGRGRSSSVGST RTVKGRDMGVEKGGVAGEGEGKTLGAMNLKNLVDKMVQTVSALRVGGGAERQDQPRVMPA SDLEAMAEESMPTPLPSRHKPSGKNLEDMFDNSGRPEYDSDQDTVVGASKTTEKKSKVNG KTIAADEISGVMQEIPTGRSKSRKRRMWTDPRTDEEASRVLRFLRRGKGAAPVETGNSRE RSRGQGYERITIE | nothing | nothing significant found with BLASTp against NCBI database |
13 | 5 | 484,874 | 2 | 126 | MQLTRSLSTALVALLLSSIATGHRIPAQSEELQLRDAAPAEVNETGTPPVVLPVDDTLSA DVIVDETEHGSLVGRAVHPRQLGKGKGGGKGKGGGKGKGGAKGKGGGKGKGGKGKGGKGK GGKGKG | signal peptide | |
14 | 5 | 1,699,000 | 5 | 503 | MTPDVDKPNRTIPNLQKQLSVEREEKELKEAQYQFRIQELQDEINSLRDNEHESISTGCP QPEPGTTSVNREDIVVRAMLRGTSPAMLHQEGTIALPLSESPRLSVSHSEDHYEWKDNIT ALALTSQGEDTPKVAYKVEEGSQNDESDFDEVDYRIPMKGKEKWKAAVTSERYKYREQKD REYREALNKQHVDGSDRILRMDELVAEGNQPWSTFNMRHTLKATTAHDIPLQSSKSHPVE SHDVPLSDHDWISGKHPDDPRAEDRLAPEDVDVKLAPLKDDTAMGSVPDLGYGLPRELSI RPQNESKTDDGNIQEDQSDNQTVYSDDGSIDGDILNVCKTELADSLANHIRQLEVGPEGY ANITRKLPPLLKAFALRVGIQAHRGCRGMLCSLCTSIATKPASEYNGTSTEALGSRIINW IQHDEDSDSTGLEQQPSKETPDELPVEVEADGINFLPDDHQGLAHQRNHHSSNFGEHSGV SWLLALWCETPKLWSFGMVIVAI | nothing | nothing significant found with BLASTp against NCBI database |
15 | 6 | 2,341,619 | 2 | 81 | MTEDLHRDITERLRCLELQIRITSHMFIGVAQNAGDDPTNLVKVKDEMLGKLQEMRYEEE RLARERLAALKQRVPSAGNSD | nothing | |
16 | 6 | 2,662,998 | 1 | 382 | MSAPLLMHPAEPATADNTKPRLACPFFRYDPCRHYACASYELKGFEAVKKHLERKHILKN HCARCFRSFESEDARNNHIVSECCSIALGRDEITYDEWTRARRCPRTKSCEVKWKWLWTT FFKLPALPRELVYFQDAVVEAKNVLIDPVTIQSVLKARLHLDQQEISSVADEVREALLRK NSGARPYRVCDSEGGGDNGIPANLKASGYGSMGGGAAEMEAEAVAFALPPARHALLPEEP CLPIIGESSPHPAAAVSPVTPLPTSFSLGPILVPQQPASTSGGGPETNTFDAWRTVCLVP WATADGILARLMEDPISWFKPDGPKWSDVYDHIDRDALRKFWALGNTPAVQVSIPIRSTH VQSLAAIESKLFDFEVAGIRPS | nothing | |
17 | 6 | 2,780,217 | 1 | 214 | MDTKDEDSAQQQSSPLLPISNHPPSSRPRTPILLKLETNLPLVTPAQPPETTPQETWDYP TSLRQLTALLLFTLQLLILITYHPSFLSLLPIPGPLSNHHCLLLADTIITCLAIIISSYV HFCIASLDCELLEQGWKPVYFYIMAADETVILLAAASSGLENVCSWGLFVVTVGSWYVGW RLGAVEVLSRRLFRAEGWEFGQGEGEEGRGLRVV | transmembrane domain | |
18 | 6 | 4,158,427 | 4 | 64 | MACDSHGRQPSEFALVHEALPRDIHLPTCIHASPKRKTVSSSDTKPRRFLLHTQGVTSGP RACG | nothing | |
19 | 7 | 440,886 | 8 | 626 | MVEGVRAFDKLDWKDDVAFCSLTEDMEEAVGPGDEVFVCSNQDGMTGSWEMIHNSSSFGA PPITSELFENANEEPMIDPAVLGDTWSQMKAWATLCGIKDDPIAPGIAELLEIEEQESGD GGFCCYGTISHAEVKLVGNLAESRDRLLNNEHVQSFAVIKHDDYLMVIFSDNHIFAQVNE AVSQALTSLFNKFKFFEVKAFAQIGKIQSLFYQSHTPGQAKLRVDINIYGSAADADAVGL YLGSTAKLYLQDPEYGTENIEYLNRQLIHFPGFEEPKVFAGPGADFANKTSKALQGVRSQ REHFDQTLSQILLTSRSHHVLVVGRNQKRPQTTLFKAACEIRANFGWCLTATPIQNRLEE LGSPLAFLPIDQLQNRAMFKKKIMDASSPDAHTMLELPPIEERYHYITLSQEERNRYDKT AADMSNWINHKTGLHVLTPNSGDDNNDKVDHFDLSGVSSKIEVLIRHLQQTPRDTKRYVG SARLAEVLENQAYINSPSIVFSCWTKTLDLVALHLTRMKILHQRIDGRQKLAERQHNMSR FVSDEGTSVPVLLTTTGVGAFGLNLTAANHVYILEPQWNPSVESQALSRVARRGQKKTVL VTRYLVHGTVEILRKMRLAEAGWATP | transcription facteur SNF2 related, DNA binding domain, ATP binding site | Transcript overlap two features now annotated as pseudogenes |
20 | 7 | 3,133,570 | 2 | 52 | MPPKILSEKHEALRQDVNAKMNKFELRINRKVDDHMQLRDMFHDRREATSFS | nothing |