Fig. 6

Dot plot. a Search for query and reference genomes. b Output: dot plot. The reference genome is on the X-axis, the query genome on the Y-axis. The genes are shown at the edge of the plot in green and violet, respectively. By default, unique forward alignments are colored in blue, unique reverse alignments in green and repetitive alignments in orange. c Zooming in is achieved by drawing a rectangle with the mouse over a region with repeated elements. d A click on the suspicious gene reveals it to be a transposase. (⚙) Settings sidebar: Configure how the plot is rendered