Skip to main content

Table 2 The top 10 upregulated or downregulated proteins in goose AF vs NF

From: Integrated transcriptome and proteome revealed that the declined expression of cell cycle-related genes associated with follicular atresia in geese

Protein IDa

Gene

Gene full name

C (%)b

Peptidesc

Log2FCd

UP/DOWN

Cluster-9112.25489;orf2

MMP3

stromelysin-1-like

9

1

1.41

up

Cluster-9112.14658;orf2

HBAD

hemoglobin alpha D subunit

10

1

0.75

up

Cluster-9112.10601;orf1

HSPB7

heat shock protein beta-7

10

1

0.70

up

Cluster-9112.22775;orf1

MLEC

myosin light chain 3

16

2

0.63

up

Cluster-9112.23899;orf1

PRC2A

Protein PRRC2A

9

1

0.62

up

Cluster-9112.6017;orf1

LYG

lysozyme g

25

4

0.61

up

Cluster-9112.9523;orf1

TPPC1

trafficking protein particle complex subunit 1

13

2

0.58

up

Cluster-9112.12518;orf1

IF2B

Eukaryotic translation initiation factor 2 subunit 2, partial

14

1

0.58

up

Cluster-9112.19651;orf1

IKBE

NF-kappa-B inhibitor epsilon

3

1

0.55

up

Cluster-9112.13569;orf1

MMP9

matrix metalloproteinase-9-like, partial

38

19

0.55

up

Cluster-9112.10020;orf1

UTP18

U3 small nucleolar RNA-associated protein 18 homolog

2

1

−1.28

down

Cluster-9112.11244;

AAKB1

minus strand

1

1

−1.27

down

Cluster-9112.4474;orf1

GNMT

glycine N-methyltransferase

3

1

−1.11

down

Cluster-9112.11859;orf1

CCNT1

cyclin-T1

2

1

−0.95

down

Cluster-9112.13068;orf1

PLIN3

perilipin-3 isoform X1

21

5

−0.87

down

Cluster-9112.12939;orf1

NOP53

hypothetical protein AV530_003974

3

1

−0.83

down

Cluster-9112.8116;orf1

A1AT

alpha-1-antitrypsin-like

3

1

−0.82

down

Cluster-9112.15043;orf2

POL

hypothetical protein DUI87_09561

18

13

−0.79

down

Cluster-9112.13866;orf1

IPO13

Importin-13, partial

4

3

−0.79

down

Cluster-9112.11626;orf1

NICA

nicastrin

8

4

−0.77

down

  1. aThe number of proteins obtained by mass spectrometry and annotation corresponding to the transcript database
  2. bSequence coverage (%), the ratio of the number of amino acids in every peptide that matches with the mass spectrum in the total number of amino acids in the protein sequence
  3. cNumber of matching peptides
  4. dRelative change (x-fold) in atretic follicles compared to normal follicles