Fig. 1
Comparative genomics analysis of liver cells between laying and ceased-laying ducks. A-B t-distributed stochastic neighbor embedding (t-SNE) analysis of duck liver cell data. Cells are colored by experimental samples (A). Cells are colored by cell type cluster (B). Circle of same color represents the cell type, cell types and the marker genes were shown by arrows. C The percentage of different cell types in different samples. D The percentage of different cell clusters of hepatocytes in two samples. E A gene expression heatmap showing the expression of marker genes for cluster 0, 3, 12 and 15 in duck liver data. Rows correspond to the top 10 marker genes in individual clusters; columns are individual cells, ordered by clusters. Red corresponds to high expression level; blue corresponds to low expression level