Table 1 A summary of observed LD (r2) among SNP pairs and the number of significant SNP pairs per chromosomes and genomes of Iranian bread wheat cultivars and landraces
Ch | Cultivar | Landrace | ||||||
|---|---|---|---|---|---|---|---|---|
TNSP | r2 | Distance (cM) | NSSP | TNSP | r2 | Distance (cM) | NSSP | |
1A | 85575 | 0.148218 | 1.737691 | 27125 (31.7%) | 92925 | 0.112764 | 1.596397 | 33515 (36.07%) |
2A | 118025 | 0.292156 | 0.974187 | 57858 (49.02%) | 123175 | 0.297454 | 0.944378 | 68675 (55.75%) |
3A | 83675 | 0.159365 | 2.576447 | 25903 (30.96%) | 73525 | 0.136413 | 2.939734 | 28144 (38.28%) |
4A | 114925 | 0.371766 | 1.513597 | 57774 (50.27%) | 108375 | 0.376224 | 1.612148 | 65451 (60.39%) |
5A | 59375 | 0.169369 | 2.383461 | 18718 (31.53%) | 58475 | 0.150278 | 2.416511 | 24007 (41.06%) |
6A | 85175 | 0.181387 | 1.487802 | 29645 (34.8%) | 84425 | 0.181735 | 1.501019 | 40176 (47.59%) |
7A | 128575 | 0.234215 | 1.344495 | 49426 (38.44%) | 126575 | 0.214252 | 1.365959 | 63357 (50.05%) |
1B | 131075 | 0.206251 | 1.063813 | 49717 (37.93%) | 133525 | 0.157517 | 1.041252 | 63803 (47.78%) |
2B | 165475 | 0.198105 | 0.859164 | 66129 (39.96%) | 155625 | 0.177663 | 0.913543 | 78536 (50.46%) |
3B | 176175 | 0.245726 | 0.876581 | 78363 (44.48%) | 170925 | 0.221549 | 0.903978 | 89150 (52.16%) |
4B | 51325 | 0.1455 | 2.516753 | 13477 (26.26%) | 43025 | 0.1018 | 3.002768 | 12311 (28.61%) |
5B | 134225 | 0.204683 | 1.433217 | 55633 (41.45%) | 134675 | 0.14301 | 1.449279 | 56285 (41.79%) |
6B | 158275 | 0.205457 | 0.788418 | 66108 (41.77%) | 164475 | 0.139023 | 0.758663 | 71582 (43.52%) |
7B | 132875 | 0.156677 | 1.102364 | 41160 (30.98%) | 125875 | 0.129711 | 1.157535 | 50573 (40.18%) |
1D | 37075 | 0.294821 | 4.409069 | 16539 (44.61%) | 40975 | 0.232567 | 3.832101 | 19755 (48.21%) |
2D | 48025 | 0.23446 | 2.2455 | 16275 (33.89%) | 52825 | 0.169092 | 2.048568 | 20548 (38.9%) |
3D | 25475 | 0.143085 | 6.286093 | 5413 (21.25%) | 30125 | 0.174879 | 5.31564 | 11411 (37.88%) |
4D | 10275 | 0.167587 | 10.56621 | 2189 (21.3%) | 10375 | 0.14746 | 10.71346 | 3543 (34.15%) |
5D | 22375 | 0.155406 | 9.337668 | 5503 (24.59%) | 24825 | 0.142184 | 8.361416 | 8953 (36.06%) |
6D | 28475 | 0.142966 | 5.369092 | 6844 (24.04%) | 33475 | 0.14123 | 4.565844 | 12606 (37.66%) |
7D | 34475 | 0.208327 | 5.795738 | 10809 (31.35%) | 40475 | 0.153099 | 4.947296 | 14019 (34.64%) |
A genome | 675325 | 0.235213 | 1.620443 | 266449 (39.4%) | 667475 | 0.223484 | 1.64269 | 323325 (48.4%) |
B genome | 949425 | 0.20158 | 1.083656 | 370587 (39.0%) | 928125 | 0.160951 | 1.110386 | 422240 (45.5%) |
D genome | 206175 | 0.205106 | 5.343207 | 63572 (30.83%) | 233075 | 0.170391 | 4.707401 | 90835 (38.97%) |
Total | 1830925 | 0.214383 | 1.761302 | 700608 (38.3%) | 1828675 | 0.184979 | 1.76314 | 836400 (45.7%) |