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Fig. 2 | BMC Genomics

Fig. 2

From: Assembly and annotation of the Gossypium barbadense L. ‘Pima-S6’ genome raise questions about the chromosome structure and gene content of Gossypium barbadense genomes

Fig. 2

Synteny plots between Pima-S6 and Pima-3-79 HAU.1, Pima3-79 HAU.2, Pima-3-79 HGS, Pima90 and Hai7124. In these synteny plots, the reference genome is represented by blue horizontal lines and the query genome by red horizontal lines. Vertical lines represent syntenic (gray), inverted (orange), translocated (green) and duplicated (blue) regions. Chromosome ids are indicated on the left side of the plots. The 26 Pima-S6 chromosomes were aligned using minimap2 versus the 26 chromosomes of the Pima-3-79 HAU.1, Pima-3-79 HAU.2, Pima-3-79 HGS, Pima90 or Hai7124 genome assemblies, and synteny analysis was carried out using syri

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BMC Genomics

ISSN: 1471-2164

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