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Fig. 3 | BMC Genomics

Fig. 3

From: Assembly and annotation of the Gossypium barbadense L. ‘Pima-S6’ genome raise questions about the chromosome structure and gene content of Gossypium barbadense genomes

Fig. 3

Chromosome A01 Pima-S6 vs. Pima 3–79 synteny plots. (a) Chromosome A01 synteny plots. A synteny analysis was carried out between chromosome A01 of the different assemblies indicated on the left side of each plot. Inversion (Inv) coordinates are indicated above and below each plot. Vertical lines represent syntenic (grey), inverted (orange), or duplicated (blue) regions. Note that there is no inversion in the Pima 3–79 HAU.2 vs. Pima-S6 plot at the coordinates where an inversion is present in the Pima 3–79 vs. Pima-S6, Pima 3–79 RagTag vs. Pima-S6 or Pima 3–79 HAU.2 vs. Pima 3–79 HGS plots. A close-up on the Pima-S6 inversion boundaries (b) in the Pima-S6 vs. Pima 3–79 RagTag plot showed that the inversion starts and ends at unambiguously assembled regions

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BMC Genomics

ISSN: 1471-2164

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