Fig. 4From: Assembly and annotation of the Gossypium barbadense L. ‘Pima-S6’ genome raise questions about the chromosome structure and gene content of Gossypium barbadense genomesNumber of orthogroups shared between Gossypium genome assemblies. In these UpSet63 plots, set size indicates the number of orthogroups for each species, and intersection size indicates the number of orthogroups in each of the intersections shown below the corresponding bar. A total of 62,760 phylogenetic hierarchichal orthogroups were identified from the annotated proteins of G. hirsutum TM-1, G. barbadense Pima-S6, G. barbadense Pima 3–79 RagTag, G. barbadense Pima 3–79 HAU.2, G. barbadense Hai7124, G. tomentosum, G. mustelinum, G. darwinii, G. herbaceum, G. arboreum and G. raimondii. (a) Number of orthogroups shared between Pima-S6 and Pima 3–79 RagTag. Over 90% of the orthogroups are shared between both assemblies. (b) Number of orthogroups shared between three Pima assemblies, Pima-S6, Pima 3–79 RagTag and Pima 3–79 HAU.2. A majority of orthogroups are shared between the three assemblies. Pima-S6 and Pima 3–79 RagTag also share an important number of orthogroups that are absent in HAU.2, and vice versa. This same pattern is observed in (c) and (d), with a majority of orthogroups shared between the three species plotted, an important number of orthogroups only shared by Pima-S6 and Pima 3–79 RagTag, and an important number of orthogroups exclusive of the third assembly. (e) Number of orthogroups shared across all eleven assemblies. Only the first 30 most abundant intersections were plotted, with the last intersection shown having 272 orthogroups. 222 orthogroups are exclusive of Pima-S6, 265 of Pima 3–79 RagTag and 66 of TM-1. Note that the second most abundant intersection is that of orthogroups exclusive of Pima-S6 and Pima 3–79 RagTag.Back to article page