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Fig. 3 | BMC Genomics

Fig. 3

From: peaksat: an R package for ChIP-seq peak saturation analysis

Fig. 3

The impacts of fold-enrichment threshold and input depth on peak saturation. A Number of peaks versus the number of reads across different fold-enrichment thresholds (mapped to shades of red). Data shown are from the pooled replicates with combined sequencing rounds. B Heatmap of the number of peaks called for combinations of input and ChIP read depths. Numbers along with the color scale indicate thousands of peaks. C Number of peaks versus input read depth curves for all cell lines. All sequencing depths have been limited to 50 M reads for this analysis

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