Table 1 Whole genome resequencing results of Apostichopus japonicus
Groups | Reads mapping rate % | Q20% | Q30% | GC% | Average sequencing depth | Number of SNPs | The proportion of heterozygous loci% |
|---|---|---|---|---|---|---|---|
BSD | 81.29 | 94.16 | 88.04 | 37.45 | 10.77 | 9,141,887.40 | 0.22 |
PD | 86.23 | 95.75 | 90.75 | 37.89 | 11.98 | 8,941,680.23 | 0.21 |
HLW | 89.36 | 95.49 | 90.92 | 39.82 | 12.44 | 9,211,083.43 | 0.23 |
SD | 80.89 | 94.62 | 88.95 | 37.70 | 11.25 | 8,808,006.8 | 0.20 |
XXM | 87.07 | 96.04 | 91.16 | 37.74 | 13.03 | 8,730,540.47 | 0.22 |
LS | 90.28 | 95.84 | 91.39 | 39.55 | 12.22 | 9,059,672.47 | 0.21 |
RUS | 88.40 | 95.41 | 90.82 | 40.02 | 12.41 | 9,173,089.17 | 0.22 |