Table 3 SNP loci and candidate genes associated with the parapodium number traits of A. japonicus
Scaffold | Position(bp) | -logP | SNP | MAF | Gene | Gene symbol | Annotation |
|---|---|---|---|---|---|---|---|
Scaffold115 | 109,061 | 7.70 | A/T | 0.07 | AJAP04724; AJAP04725 | CPSF6; MMEL1 | exon-exon junction complex binding; Membrane metallo-endopeptidase-like 1 |
Scaffold199 | 507,705 | 8.32 | G/A | 0.22 | AJAP07248 | ARG2 | Arginase |
Scaffold199 | 507,706 | 8.44 | T/A | 0.22 | AJAP07248 | ARG2 | Arginase |
Scaffold254 | 557,682 | 8.08 | G/A | 0.24 | AJAP08772 | SEMA5A | Sema domain, seven thrombospondin repeats (Type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (Semaphorin) |
Scaffold255 | 1422 | 8.85 | T/C | 0.16 | AJAP08772; AJAP08773 | SEMA5A; –- | Sema domain, seven thrombospondin repeats (Type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (Semaphorin); Glucose dehydrogenase C-terminus |
Scaffold255 | 3001 | 8.58 | C/T | 0.13 | AJAP08772; AJAP08773 | SEMA5A; –- | Sema domain, seven thrombospondin repeats (Type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (Semaphorin); Glucose dehydrogenase C-terminus |
Scaffold255 | 5172 | 10.28 | T/G | 0.14 | AJAP08773 | –- | Glucose dehydrogenase C-terminus |
Scaffold255 | 5182 | 10.29 | G/A | 0.15 | AJAP08773 | –- | Glucose dehydrogenase C-terminus |