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Table 4 RepeatMasker based analysis of repeating elements in C. tripartitus unigenes

From: Transcriptome analysis of the endangered dung beetle Copris tripartitus (Coleoptera: Scarabaeidae) and characterization of genes associated to immunity, growth, and reproduction

 

number of elements*

length occupied

percentage of sequence

SINEs:

 

4

201 bp

0.00%

ALUs

0

0 bp

0.00%

MIRs

2

88 bp

0.00%

LINEs:

 

55

6,960 bp

0.02%

LINE1

7

372 bp

0.00%

LINE2

5

340 bp

0.00%

L3/CR1

29

2,346 bp

0.01%

LTR elements:

 

28

9,901 bp

0.01%

ERVL

1

46 bp

0.00%

ERVL-MaLRs

0

0 bp

0.00%

ERV_class I

7

911 bp

0.00%

ERV_class II

0

0 bp

0.00%

DNA elements:

 

320

80,947 bp

0.18%

hAT-Charlie

135

34,337 bp

0.08%

TcMar-Tigger

89

24,442 bp

0.05%

Unclassified:

 

1

86 bp

0.00%

Total interspersed repeats:

 

98,095 bp

0.22%

Small RNA:

 

15

6,941 bp

0.01%

Satellites:

0

0 bp

0.00%

Simple repeats:

8,082

348,595 bp

0.77%

Low complexity:

1,960

96,545 bp

0.21%

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BMC Genomics

ISSN: 1471-2164

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