Table 1 Ordered list of gene families and homologues found within the sugarcane monoploid genome associated with UDP-glucose metabolism

ADP-Glucose pyrophosphorylase (EC No. 2.7.7.27)

AGP 1–1

Sh03_t015880

Sh03:28291165..28294172 (+ strand)

3008

XM_002455967.2

2*

AGP 1–2

Sh03_t015870

Sh03:28260610..28265076 (+ strand)

4467

XM_002455967.2

2*

AGP 2–1

Sh09_t019370

Sh09:34396677..34402313 (+ strand)

5637

XM_021448378.1

12*

AGP 2–2

Sh01_t024650

Sh01 Sh01:42078537..42080613 (− strand)

2077

XM_021448378.1

12*

AGP 2–3

Sh01_t024670

Sh01 Sh01:42115922..42117998 (− strand)

2077

XM_021448378.1

12*

AGP 3

Sh02_t005750 & Sh02_t005760

Sh02 Sh02:9491664..9495697 (− strand)

3784

XM_021452431.1

0

AGP 4

Not found in monoploid genome

n/a

n/a

XM_021465103.1

6

AGP 5

Not found in monoploid genome

n/a

n/a

XM_002462095.2

6

AGP 6

Not found in monoploid genome

n/a

n/a

XM_002463876.2

4

AGP 7

Not found in monoploid genome

n/a

n/a

XM_021465103.1

2

Cellulose Synthase (EC No. 2.4.1.12)

CesA 1–1

Sh09_t005560 & Sh09_t005570

Sh09:9351086..9355687 (− strand)

6842

XM_002440649.2

11

CesA 1–2

Sh03_t003840

Sh03:6782646..6790013 (+ strand)

7368

XM_002455055.2

7

CesA 2

Not found in monoploid genome

n/a

n/a

XM_021446681.1

3

CesA 3

Not found in monoploid genome

n/a

n/a

XM_021453750.1

14

CesA 4

Sh03_t021020 & Sh03_t021030

Sh03:36782684..36788213 (+ strand)

5529

XM_002456316.2

6

CesA 5

Sh10_t013650

Sh10:25483024..25488997 (+ strand)

5974

XM_021450574.1

19

CesA 6

Sh02_t006050

Sh02:10077014..10082433 (+ strand)

5420

XM_002459590.2

8

CesA 7

Sh01_t017850

Sh01:28983708..28987579 (− strand)

3872

XM_002467064.2

6

CesA 8

Sh_229N08_t000100

Not in STP only found in BAC sequences

5414

XM_021452948.1

4

CesA 9

Sh02_t013200

Sh02:25312245..25316453 (+ strand)

4209

XM_002460184.2

8

Cellulose Synthase-Like A (EC No. 2.4.1.32)

CSLA 1

Sh04_t005720

Sh04:8606968..8613408 (− strand)

6441

XM_002453415.2

2

CSLA 2

Sh01_t020080

Sh01:32953742..32958781 (+ strand)

5040

XM_021451851.1

0

CSLA 3

Sh02_t009410

Sh02:16752941..16756026 (+ strand)

3086

XM_002459829.2

0

CSLA 6

Sh04_t016980

Sh04:29898814..29901757 (+ strand)

2944

XM_021458643.1

0

CSLA 7

Sh02_t028710

Sh02:48277289..48281992 (+ strand)

4704

XM_002461027.2

1

Cellulose Synthase-Like C (EC No. 2.4.1)

CSLC 1

Sh03_t022070

Sh03:38066914..38070773 (− strand)

3860

XM_021457183.1

0

CSLC 2

Sh_029O19

Not in STP only found in BAC sequences

2475

XM_021454662.1

1

CSLC 7

Sh09_t015100

Sh09:28563626..28566886 (+ strand)

3261

XM_021447983.1

1

CSLC 9

Sh01_t005210

Sh01:7634941..7643711 (+ strand)

8771

XM_021448173.1

3

Cellulose Synthase-Like E (EC No. 2.4.1)

CSLE 2

Sh04_t018310

Sh04:31810139..31814041 (− strand)

3903

XM_021460485.1

0

CSLE 6–1

Sh02_t015890

Sh02:30256283..30259442 (− strand)

3160

XM_002462490.2

7

CSLE 6–2a

Sh02_t015810

Sh02:30148511..30154022 (− strand)

5512

XM_002462489.2

15*

CSLE 6–2b

Sh02_t015820

Sh02:30158577..30163879 (− strand)

5303

XM_002462489.2

15*

Cellulose Synthase-Like F (EC No. 2.4.1.34)

CSLF 1

Sh02_t024280 & Sh02_t024290

Sh02:42020371..42021308 (− strand)

1226

XM_002462951.2

0

CSLF 3–1

Sh02_t024300, Sh02_t024310 & Sh02_t024320

Sh02:42028378..42030117 (− strand)

2191

XM_021452870.1

2*

CSLF 3–2

Sh02_t024330

Sh02:42047848..42050979 (− strand)

3132

XM_021452421.1

2*

CSLF 3–3

Sh02_t024380, Sh02_t024390 & Sh02_t024400

Sh02:42134676..42135020 (− strand)

2754

XM_021454665.1

2*

CSLF 6

Not found in monoploid genome

n/a

n/a

XM_002445057.2

5

CSLF 8

Not found in monoploid genome

n/a

n/a

XM_021454445.1

2

CSLF 9

Sh02_t024360 & Sh02_t024370

Sh02:42109930..42111354 (+ strand)

3286

XM_021452834.1

0

Cellulose Synthase-Like D (EC No. 2.4.1)

CSLFD 1

Sh01_t021550

Sh01:36986329..36990074 (− strand)

3746

XM_002467380.2

2

CSLFD 2

Not found in monoploid genome

n/a

n/a

XM_002436311.2

2

Cellulose Synthase-Like G (EC No. 2.4.1)

CSLG 2

Sh03_t033750, Sh03_t033760, Sh03_t033770 & Sh03_t033780

Sh03:54594123..54601044 (− strand)

6921

XM_021455434.1

1

Cellulose Synthase-Like H (EC No. 2.4.1)

CSLH 1–1

Not found in monoploid genome

n/a

n/a

XM_021463400.1

1

CSLH 1–2

Not found in monoploid genome

n/a

n/a

XM_021463399.1

1

Cytosolic Invertase (EC No. 3.2.1.26)

CINV 1–1

Sh04_t018360

Sh04:31829368..31832935 (+ strand)

3568

XM_002452587.2

5*

CINV 2

Sh04_t002850

Sh04:3999533..4003239 (− strand)

3707

XM_002453920.2

1

CINV 1–2

Sh02_t022210

Sh02:39433217..39439275 (− strand)

6059

XM_002452587.2

5*

Alkaline/Neutral Invertase (EC No. 3.2.1.26)

ANINV F1

Not found in monoploid genome

n/a

n/a

XM_002450357.2

0

ANINV F2

Sh04_t003010

Sh04:4348910..4351981 (+ strand)

3072

XM_002451407.2

3

ANINV 1–1

Sh01_t031210

Sh01:52365269..52368792 (+ strand)

5203

XM_002465314.2

1

ANINV 1–2

Sh03_t010910

Sh03:18378830..18382742 (+ strand)

3913

XM_002455539.2

7

ANINV 3

Sh04_t011120

Sh04:20023276..20026209 (+ strand)

2934

XM_002452150.2

3

Cell Wall Invertase (EC No. 3.2.1.26)

CWI 1

Sh_226D11

In peripheral contigs (Sh_226D11:88740..93318)

4579

XM_021459751.1

6*

CWI 2–1

Sh06_t003700

Sh06:8281155..8284931 (+ strand)

3777

XM_002489067.2

1*

CWI 2–2

Sh06_t003690

Sh06:8271558..8274605 (− strand)

3048

XM_002489061.2

1*

CWI 2–3

Not found in monoploid genome

n/a

n/a

XM_002489065.2

1*

CWI 3

Sh01_t007690 & Sh01_t007700

Sh01:10946034..10947984 (− strand)

1895

XM_021451676.1

0

CWI 4

Not found in monoploid genome

n/a

n/a

XM_021455138.1

3

CWI 5

Not found in monoploid genome

n/a

n/a

XM_002448667.2

1

CWI 7

Not found in monoploid genome

n/a

n/a

XM_002448668.2

1

Vacuolar Invertase (EC No. 3.2.1.26)

VINV

Sh06_t010830

Sh06:19959815..19964282 (+ strand)

4468

XM_002446812.2

1

Fructokinase (EC No. 2.7.1.4)

FK 1

Sh03_t028370

Sh03:47224065..47227404 (− strand)

3340

XM_002458864.2

2

FK 2

Sh_206L06_t000080

Not in STP only found in BAC sequences

3072

XM_021464799.1

16

FK 6

Not found in monoploid genome

n/a

n/a

XM_002436715.2

1

Glucuronokinase (EC No. 2.7.1.43)

GlcK

Sh08_t000060 & Sh08_t000070

Sh08:47728..50793 (+ strand)

2983

XM_002441606.2

11

Glucose-6-Phosphate Isomerase (EC No. 5.3.1.9)

G6PI (Chloroplastic) 1

Not found in monoploid genome

n/a

n/a

XM_002462464.2

2

G6PI (Chloroplastic) 2

Sh02_t015090, Sh02_t015100, Sh02_t015110, Sh02_t015120 & Sh02_t015120

Sh02:28752694..28762708 (+ strand)

10,014

XM_002462464.2

5

G6P1 (Cytoplasmic) 1

Not found in monoploid genome

n/a

n/a

XM_021448861.1

9

Myo-inositol oxygenase (EC No. 1.13.99.1)

MIOX

Not Found in monoploid genome

n/a

n/a

XM_021449433.1

12

Myo-inositol phosphatase (EC No. 3.1.3.25)

MIP 3

Sh01_t014550

Sh01:22505310..22508087 (− strand)

2778

XM_002466826.2

8

Myo-inositol phosphate synthase (EC No. 5.5.1.4)

MIPS 1

Sh01_t020350 & Sh01_t020360

Sh01:33923258..33924805 (− strand)

3661

XM_021462678.1

0

MIPS 2

Not Found in monoploid genome

n/a

n/a

XM_021453593.1

27

Phosphoglucomutase (EC No. 5.4.2.2)

PGM (chloroplastic) 1

Sh03_t015170

Sh03:27010632..27018435 (− strand)

7804

XM_002466531.2

4

PGM (cytoplasmic) 2

Sh01_t009050

Sh01:13231372..13239619 (+ strand)

6964

XM_002458121.2

12

PGM Bi-Functional 1

Not found in monoploid genome

n/a

n/a

XM_021452820.1

6

PGM Bi-Functional 2

Not found in monoploid genome

n/a

n/a

XM_002459927.2

2

Sucrose Phosphate Phosphatase (EC No. 3.1.3.24)

SPP 1

Not found in monoploid genome

n/a

n/a

XM_021459652.1

12

SPP 2

Sh09_t003980

Sh09:6497383..6499722 (+ strand)

2340

XM_021447001.1

5

SPP 3

Sh09_t003990

Sh09:6500269..6502971 (+ strand)

2703

XM_021447003.1

0

Sucrose Phosphate Synthase (EC No. 2.4.1.14)

SPS 1

Sh03_t030240

Sh03:49867902..49873435 (− strand)

5534

XM_002458946.2

12

SPS 2

Sh04_t004940

Sh04:7514628..7521887 (+ strand)

7260

XM_021459119.1

2

SPS 3

Sh10_t014400

Sh10:26819177..26833006 (− strand)

13,830

XM_021449299.1

2

SPS 4

Sh_230M24_p000030

Not in STP only found in BAC sequences

30,575

XM_002441477.2

9

SPS 5

Sh_254P01_p000060

Not in STP only found in BAC sequences

6027

XM_002449248.2

1

Sucrose Synthase (EC No. 2.4.1.13)

SuSy 1–1

Sh10_t006690

Sh10:10530379..10537554 (+ strand

7176

XM_021449494.1

34*

SuSy 1–2

Sh10_t006710

Sh10:10605935..10613992 (− strand)

8058

XM_021449494.1

34*

SuSy 2

Sh01_t026370 & Sh01_t026380

Sh01:44996485..45001411 (+ strand)

4816

XM_021456935.1

22

SuSy 4

Sh01_t029560, Sh01_t029570 & Sh01_t029580

Sh01:49748737..49751357 (+ strand)

2600

XM_002465258.2

15

SuSy 6

Sh04_t027720

Sh04:45363593..45367165 (+ strand)

3573

XM_021459722.1

0

SuSy 7

Sh10_t019090 & Sh10_t019080

Sh10:34312395..34316604 (− strand)

4189

XM_021449504.1

3

UDP Apiose/Xylose Synthase (EC No. 4.1.1.35)

UAXS

Sh03_t033730

Sh03:54573981..54577001 (− strand)

3021

XM_002459126.2

3

UDP-glucose 4,6-dehydratase (trifunctional) (EC No. 4.2.1.76)

RHM 1–1

Sh01_t033530

Sh01:55740390..55744433 (− strand)

4044

XM_021450789.1

10

RHM 1–2

Sh01_t033540

Sh01:55748951..55751423 (− strand)

2473

XM_021449119.1

12

RHM 3

Sh09_t007030

Sh09:13224450..13225765 (− strand)

1316

XM_021447354.1

0

UDP-glucose Dehydrogenase (EC No. 1.1.1.22)

UGD 2

Sh01_t013840

Sh01:21392670..21394244 (+ strand)

1575

XM_021463640.1

0

UGD 4

Sh01_t037600

Sh01:62131181..62134997 (− strand)

3817

XM_002468250.2

18

UGD 5

Sh01_t005970

Sh01:8657598..8660482 (− strand)

2885

XM_021464912.1

23

UDP-glucose Pyrophosphorylase (EC No. 2.7.7.9)

UGPase 1

Sh10_t017220

Sh10:31655313..31671316 (− strand)

16,004

XM_021449324.1

1

UGPase 2

Sh09_t013490

Sh09:26041479..26044800 (+ strand)

8212

XM_021447834.1

15

UGPase 3

Not found in monoploid genome

n/a

n/a

XM_021447834.1

3

UGPase 4

Not found in monoploid genome

n/a

n/a

XM_002453140.2

1

UDP-glucose-4-Epimerase (EC No. 5.1.3.2)

GALE 1–1

Not Annotated

Sh09:36286695..36291305 (+ strand)

4526

XM_002467816.2

19*

GALE 1–2

Not Annotated

Sh01:49061275..49066223 (− strand)

4949

XM_002467816.2

19*

GALE 2

Sh07_t008170

Sh07:13109984..13111148 (+ strand)

1165

XM_002445384.2

8

GALE 3

Not Annotated

Sh02:34046443..34049056 (− strand)

2613

XM_021452554.1

0

GALE 4

Not Annotated

Sh02:19730286..19736641 (+ strand)

6356

XM_002462165.2

1

UDP-Glucuronic Acid Epimerase (EC No. 5.1.3.12)

UGE 1–1

Not Annotated

Sh04:41812833..41814159 (− strand)

1327

XM_002452919.2

3

UGE 1–2

Not Annotated

Sh10:9476275..9477597 (− strand)

1323

XM_002437940.2

0

UGE 6–1

Not Annotated

Sh07:26068992..26070452 (+ strand)

1461

XM_002444670.2

0

UGE 6–2

Not Annotated

Sh02:31857034..31858595 (− strand)

1562

XM_002462575.2

2

UDP-Xylose Epimerase (EC No. 5.1.3.5)

UXE 1

Not Annotated

Sh02:2941527..2944505 (+ strand)

2979

XM_002459288.2

3

UXE 2

Not Annotated

Sh06:27777954..27782014 (− strand)

4061

XM_021463492.1

11

UXE 3

Not Annotated

Sh01:53599712..53602144 (− strand)

5097

XM_002467958.2

2

UDP-xylose synthase (UDP-glucuronic acid decarboxylase) (EC No. 4.1.1.35)

UXS 1–1

Sh03_t025580

Sh03:43004627..43007178 (+ strand)

2552

XM_002456558.2

6

UXS 1–2

Sh01_t033240

Sh01:55515466..55517229 (+ strand)

1764

XM_021464234.1

1

UXS 2–1

Not Annotated

Sh01:49677978..49684559 (+ strand)

6682

XM_002465248.2

1

UXS 2–2

Not found in monoploid genome

n/a

n/a

XM_002457713.2

1

UXS 4

Sh09_t008330

Sh09:16796741..16798837 (− strand)

2097

XM_002440927.2

11

UXS 6

Sh01_t033550

Sh01:55755363..55756710 (− strand)

7487

XM_021461997.1

7

Hexokinase (EC No. 2.7.1.11)

HXK 2

Sh03_t019610 & Sh03_t019620

Sh03:34702506..34705040 (+ strand)

2534

XM_021456830.1

0

HXK 3

Not found in monoploid genome

n/a

n/a

XM_002459027.2

2

HXK 5

Sh09_t015900

Sh09:29734562..29738896 (+ strand)

4335

XM_002440059.2

7

HXK 6

Sh03_t020670

Sh03:36265525..36272095 (− strand)

6571

XM_002458422.2

1

HXK 7

Sh09_t006090

Sh09:10277092..10280058 (+ strand)

2967

XM_002440690.2

2

HXK 8

Sh03_t002520

Sh03:4682232..4685187 (+ strand)

2956

XM_021457110.1

3

HXK 10–1

Sh09_t009120

Sh09:18357298..18360337 (− strand)

3040

XM_002440956.2

0

HXK 10–2

Sh06_t013660

Sh06:24339191..24342711 (+ strand)

3521

XM_002440956.2

0